BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485010
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16... 649 0.0
AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17... 536 7e-152
AT5G59970.1 | Symbols: | Histone superfamily protein | chr5:24... 398 3e-110
AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24... 394 4e-109
AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:24... 292 2e-78
AT2G28740.1 | Symbols: HIS4 | histone H4 | chr2:12329488-123299... 270 8e-72
> AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16883316-16883876
FORWARD LENGTH=561
Length=561
Score = 649 bits (351), Expect = 0.0
Identities = 433/471 (92%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 1 AATCTTCAAATCCAAAGTTTTCCCG-AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAG 57
|||||||||||| ||| ||| ||| ||||||| || ||| |||| | ||||||||||||
Sbjct 25 AATCTTCAAATCGAAAAATTT-CCGAAGAAAAATTC-AAG-TTCCTTTAGAAAATGTCAG 81
Query 58 GTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTC 117
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 82 GTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTC 141
Query 118 TGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTG 177
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 142 TGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGTG 201
Query 178 GAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTT 237
| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 202 GTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTCAAGATCTTTT 261
Query 238 TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCACGGAGGAAGACGGTGA 297
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 262 TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTGA 321
Query 298 CTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGGCG 357
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 322 CTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTACGGATTCGGCG 381
Query 358 GCTAGGGTTTTCGATTGTTGTTTCTGTGTTTTTCTACGTTGCTTAGATATGTTAATTTTC 417
||||||||||| ||||||||||| | ||| |||||||||| |||| ||||||||||||
Sbjct 382 GCTAGGGTTTTTGATTGTTGTTTTT-TGTGTTTCTACGTTTATTAGG-ATGTTAATTTTC 439
Query 418 AGAATTTGGTGTTAA-TTCCGaaaaaaacaaaaaCAT-GAAGGATGTTGTT 466
|| |||||||||||| ||| ||||||| ||| | || ||||| |||||||
Sbjct 440 AGGATTTGGTGTTAACTTC-GAAAAAATTAAAGA-ATTGAAGGTTGTTGTT 488
> AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17019911-17020428
REVERSE LENGTH=518
Length=518
Score = 536 bits (290), Expect = 7e-152
Identities = 347/373 (93%), Gaps = 9/373 (2%)
Strand=Plus/Plus
Query 1 AATCTTCAAATC-CAAAGTTTTCCCG-AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCA 56
|||||||||||| |||| ||| ||| ||||||| || || |||| | |||||||||||
Sbjct 25 AATCTTCAAATCGAAAAG-TTT-CCGAAGAAAAATTC--AGGTTCCTTTAGAAAATGTCA 80
Query 57 GGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGTCACAGGAAGGTT 116
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 81 GGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCATAGGAAGGTT 140
Query 117 CTGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGT 176
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 141 CTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCTCGTAGAGGT 200
Query 177 GGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTT 236
|| || || ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 201 GGTGTTAAACGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTT 260
Query 237 TTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCACGGAGGAAGACGGTG 296
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 261 TTGGAAAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGGAAGACGGTG 320
Query 297 ACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGGC 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 ACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGGT 380
Query 357 GGCT-AGGGTTTT 368
|| | ||| ||||
Sbjct 381 GGTTGAGGATTTT 393
> AT5G59970.1 | Symbols: | Histone superfamily protein | chr5:24146175-24146726
REVERSE LENGTH=552
Length=552
Score = 398 bits (215), Expect = 3e-110
Identities = 282/315 (90%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 45 GAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAACGT 104
||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 58 GAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCTTGGGTAAAGGAGGAGCCAAGCGT 117
Query 105 CACAGGAAGGTTCTGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGATTG 164
|||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||
Sbjct 118 CACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCCATTCGAAGATTG 177
Query 165 GCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTT 224
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 178 GCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCATCTACGAGGAGACACGTGGCGTC 237
Query 225 CTCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC-ACG 283
|||||||||||| | ||||| || || ||||| || || |||||||| |||||||| | |
Sbjct 238 CTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTGTCACTTACACCGAGCACGCTA-G 296
Query 284 GAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCT 343
||||||||| ||||| || ||||||||||| || ||||| ||||| |||||||| |||||
Sbjct 297 GAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTCT 356
Query 344 CTATGGATTCGGCGG 358
||| |||||||||||
Sbjct 357 CTACGGATTCGGCGG 371
> AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24051552-24052143
FORWARD LENGTH=592
Length=592
Score = 394 bits (213), Expect = 4e-109
Identities = 301/343 (88%), Gaps = 8/343 (2%)
Strand=Plus/Plus
Query 18 TTT-TCCCGAGA-AAAATCAAAGT-TTC-CTGAGAAAATGTCAGGTCGTGGAAAGGGAGG 73
||| || ||||| ||| | ||| | ||| |||| |||||||| |||||||||||||||||
Sbjct 63 TTTCTCTCGAGATAAACT-AAA-TCTTCGCTGAAAAAATGTCGGGTCGTGGAAAGGGAGG 120
Query 74 CAAAGGTTTGGGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTCTGAGAGATAACATCCA 133
||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 AAAAGGTTTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCA 180
Query 134 AGGAATCACTAAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAG 193
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 AGGAATCACCAAGCCTGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAG 240
Query 194 TGGTCTGATCTACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGGAGAATGTTATCCG 253
|||||| |||||||||||||| |||||||| |||||||||||| | ||||| || || ||
Sbjct 241 TGGTCTCATCTACGAGGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCG 300
Query 254 TGACGCCGTTACTTACACTGAGCACGC-ACGGAGGAAGACGGTGACTGCTATGGATGTTG 312
||| || || |||||||| |||||||| | |||||||||| ||||| || ||||||||||
Sbjct 301 TGATGCTGTCACTTACACCGAGCACGCTA-GGAGGAAGACTGTGACCGCCATGGATGTTG 359
Query 313 TTTATGCTCTTAAGAGACAAGGAAGAACTCTCTATGGATTCGG 355
| || ||||| ||||| |||||||| ||||| || ||||||||
Sbjct 360 TCTACGCTCTCAAGAGGCAAGGAAGGACTCTTTACGGATTCGG 402
> AT1G07820.1 | Symbols: | Histone superfamily protein | chr1:2421218-2421943
REVERSE LENGTH=726
Length=726
Score = 292 bits (158), Expect = 2e-78
Identities = 254/299 (85%), Gaps = 12/299 (4%)
Strand=Plus/Plus
Query 63 GGAAAGGGAGGCAAAGGTTTGGGCAAA-GGAGGAGCCAA-ACGTCACAGGAAGGTTCTGA 120
||||||||||| ||||| ||||| ||| |||||||| || | | ||||||||||||||||
Sbjct 210 GGAAAGGGAGGAAAAGGATTGGG-AAAGGGAGGAGCGAAGA-GGCACAGGAAGGTTCTGA 267
Query 121 GAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGAT-TGGCTCGTAGAGGTGGA 179
| |||||||| ||||||||||| ||||| || ||||| | | | ||||||||||||||
Sbjct 268 GGGATAACATTCAAGGAATCACCAAGCCTGCCATTCGTCG-TCTTGCTCGTAGAGGTGGT 326
Query 180 GTCAAGCGTATCAGTGGTCTGATCTACGAGGAGA-CACGTGGCGTTCTCAAGATCTTTTT 238
|||||||||||||||||||| |||||||| |||| || | || || ||||||||||| |
Sbjct 327 GTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCA-GAGGTGTCCTCAAGATCTTCCT 385
Query 239 GGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC-ACGGAGGAAGACGGTGA 297
|||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 386 CGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCTA-GAAGGAAGACGGTGA 444
Query 298 CTGCTATGGATGTTGTTTATGCTCTT-AAGAGACAAGGAAGAACTCTCTATGGATTCGG 355
| || ||||||||||| || ||| || ||||| ||||| | |||||||| || |||||
Sbjct 445 CCGCCATGGATGTTGTCTACGCT-TTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGG 502
> AT2G28740.1 | Symbols: HIS4 | histone H4 | chr2:12329488-12329995
REVERSE LENGTH=508
Length=508
Score = 270 bits (146), Expect = 8e-72
Identities = 260/313 (83%), Gaps = 16/313 (5%)
Strand=Plus/Plus
Query 48 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGAGGAGCCAAA-CGTCA 106
||||||||||| | ||||| ||||| ||||| || ||||||||||||| |||| | ||
Sbjct 39 AAAATGTCAGGAAGAGGAAAAGGAGGAAAAGGGTTAGGCAAAGGAGGAG-CAAAGAGACA 97
Query 107 CAGGAAGGTTCTGAGAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGAT-TGG 165
||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||| | | | |
Sbjct 98 CAGAAAGGTTCTAAGAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCG-TCTTG 156
Query 166 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGG-TCTGATCTACGAGGAGAC-ACGTGGCGT 223
|||||||||| || || ||| | |||||||| | ||||||| || || || | | || ||
Sbjct 157 CTCGTAGAGGAGGTGTGAAGAGAATCAGTGGAT-TGATCTATGAAGAAACGA-GAGGTGT 214
Query 224 -TCTCAAGATCTTTT-TGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC- 280
| | ||||| |||| |||||||||| || | || || ||||||||||||||||| ||
Sbjct 215 GT-TGAAGAT-TTTTCTGGAGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCG 272
Query 281 ACGGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTT-AAGAGACAAGGAAGAA 339
| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 273 A-GGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGC-CTTGAAGAGACAAGGAAGAA 330
Query 340 CTCTCTATGGATT 352
|||| ||||||||
Sbjct 331 CTCTATATGGATT 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5