BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485016
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46440.1 | Symbols: UXS5 | UDP-XYL synthase 5 | chr3:1708904... 1930 0.0
AT5G59290.2 | Symbols: UXS3, ATUXS3 | UDP-glucuronic acid decar... 1210 0.0
> AT3G46440.1 | Symbols: UXS5 | UDP-XYL synthase 5 | chr3:17089045-17091875
REVERSE LENGTH=1424
Length=1424
Score = 1930 bits (1045), Expect = 0.0
Identities = 1266/1363 (93%), Gaps = 53/1363 (4%)
Strand=Plus/Plus
Query 1 TTTTCCAGATAATATATTCAAAATTTTACAGAGGAAGAAGAAGAAGTT-CCGACACTTGT 59
|||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 8 TTTTCCAGATAATATATTCAAAATTTTACAGA-GAGGAAGAAGAAGTTCCCGACACTTGT 66
Query 60 GAGAGACTAT-----T-T---A--------T-TCGCTCTCTTCAGATCACAAAGTTTTCG 101
|||||||||| | | | | ||||||||||||||||||||||||||||
Sbjct 67 GAGAGACTATAAAAGTATACGATCTCCTCCTCTCGCTCTCTTCAGATCACAAAGTTTTCG 126
Query 102 TTTTTAGGGTTCTCTCATCGATCTC-GTATTCT--TCCTCTCTCTCTCATCAATGGCGTC 158
||||||||||||||||||||||||| || || | || ||| ||| ||||||||||||||
Sbjct 127 TTTTTAGGGTTCTCTCATCGATCTCGGT-TTGTGATCTTCT-TCT-TCATCAATGGCGTC 183
Query 159 AAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCTCCTTCTCCTCTCCGTAATTCCAA 218
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 184 TAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAA 243
Query 219 GTTTTGTCAGTCAAATATGAGGATCTTGATCTCAGGAGGAGCTGGATTCATTGGCTCTCA 278
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 244 GTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCA 303
Query 279 CCTTGTTGATAAGTTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTT 338
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTT 363
Query 339 CACCGGTTCAAAGGACAACCTTAAGAAGTGGATCGGTCATCCGAGATTTGAGCTTATCCG 398
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 364 CACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCG 423
Query 399 TCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTCGCATGTCC 458
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 424 TCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCC 483
Query 459 TGCTTCTCCCATTTTCTACAAGTATAACCCTGTGAAGACAATCAAGACAAATGTGATTGG 518
||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 484 TGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGG 543
Query 519 CACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAAC 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAAC 603
Query 579 CTCGGAAGTGTATGGAGATCCTCTCATCCATCCCCAGCCTGAGAGCTATTGGGGAAATGT 638
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 604 CTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGT 663
Query 639 CAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTAGCTGAGACCTTGAT 698
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 664 CAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGAT 723
Query 699 GTTTGACTACCATAGGCAGCATGGAATTGAAATCCGCATTGCCAGAATCTTCAACACTTA 758
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 724 GTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGCTAGAATCTTCAACACTTA 783
Query 759 TGGTCCACGCATGAACATTGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACT 818
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACT 843
Query 819 CCGTGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACACGCAGTTTCTGTTATGT 878
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 844 CCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACTCGCAGTTTCTGTTATGT 903
Query 879 ATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 ATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAA 963
Query 939 CATCGGTAACCCAGGTGAGTTTACCATGGTGGAACTTG-CTGAGACAGTGAAGGAGCTGA 997
|||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||
Sbjct 964 CATCGGTAACCCAGGTGAGTTTACAATGGTGGAG-TTGGCTGAGACAGTGAAAGAGCTGA 1022
Query 998 TTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGA 1082
Query 1058 AGCCGGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTG 1117
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 AGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTG 1142
Query 1118 AAGGCCTTCCCCTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCCCAAGAACTAAA 1177
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1143 AAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCACAAGAACTAAA 1202
Query 1178 ACTCTGTCA--GA--AT--GCA--C-T-A-T-CAGT-CA-------GTTCTACTTTTCAA 1217
|||| ||| || | ||| | | | | || | || |||||||||||||
Sbjct 1203 ACTCCATCACCGATCACACGCAAACGTGAATGCACTACATAACCAAGTTCTACTTTTCAT 1262
Query 1218 AATTCCATGGTGCAATTGGTTGGTTTCATATAATATGTTTCTCATACTTTCCACAGTT-A 1276
| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1263 A-TTCCATGGTGCAAGCGGTTGGTTTCATATAATATGTTTCT-A--CTTTCCACAGTCGA 1318
Query 1277 TATTGTCCCTAGAGAAAAATAAAGATTATGAACGAATGCTTTT 1319
||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1319 AATTATTCCTAGAGAAAAATAAAGATTATGAACGAATGCTTTT 1361
> AT5G59290.2 | Symbols: UXS3, ATUXS3 | UDP-glucuronic acid decarboxylase
3 | chr5:23915530-23917998 REVERSE LENGTH=1358
Length=1358
Score = 1210 bits (655), Expect = 0.0
Identities = 929/1059 (88%), Gaps = 28/1059 (3%)
Strand=Plus/Plus
Query 137 TCTCTCTCTC-ATCAATGGC-G-T-CAAGTGATAAACA-AACAAGCC-CAAAGCCTCCTC 190
|||||||||| | ||||||| | | ||||||| ||||| ||| | || ||||||||||||
Sbjct 31 TCTCTCTCTCAAGCAATGGCAGCTACAAGTGAGAAACAGAAC-A-CCACAAAGCCTCCTC 88
Query 191 CTTCTCCTTCTCCTCTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATCTTGATCT 250
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||
Sbjct 89 CTTCTCCTTCTCCTCTCCGCAATTCCAAGTTTTGTCAGCCCAATATGAGGATCTTGATCT 148
Query 251 CAGGAGGAGCTGGATTCATTGGCTCTCACCTTG-TTGATAAG-TTGATGGAAAACGAAAA 308
| ||||||||||| |||||||| |||||| ||| |||||||| || |||||||| || ||
Sbjct 149 CTGGAGGAGCTGGCTTCATTGGTTCTCAC-TTGGTTGATAAGCTT-ATGGAAAATGAGAA 206
Query 309 GAATGAGGTGATTGTTGCTGATAACTATTTCACCGGTTCAAAGGACAACCTTAAGAAGTG 368
|||||||||| |||||||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct 207 GAATGAGGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTG 266
Query 369 GATCGGTCATCCGAGATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTT-TTGATCG 427
||||||||| || || ||||| ||||| ||||||||||| || ||||| || |||||||
Sbjct 267 GATCGGTCACCCCAGGTTTGAACTTATTCGTCACGATGTTACCGAGCCT-TTGTTGATCG 325
Query 428 AGGTTGATCAGATTTACCATCTCGCATGTCCTGCTTCTCCCATTTTCTACAAGTATAACC 487
||||||||| |||||||||||| || |||||||| ||||| || |||||||| || ||||
Sbjct 326 AGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACC 385
Query 488 CTGTGAAGACAATCAAGACAAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGC 547
|||| |||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 386 CTGTTAAGACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGC 445
Query 548 GTGTTGGAGCAAGGATTTTGCTTACCTCAACCTCGGAAGTGTATGGAGATCCTCTCATCC 607
||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 446 GTGTTGGAGCAAGAATTTTACTAACCTCAACCTCTGAAGTGTATGGAGATCCTCTCATCC 505
Query 608 ATCCC-CAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTGGTGTTAGGAGCTGTTAT 666
| ||| || || |||||||| ||||||||||||||||| ||||| ||| |||| || |||
Sbjct 506 A-CCCTCAACCAGAGAGCTACTGGGGAAATGTCAACCCTATTGGGGTTCGGAGTTGCTAT 564
Query 667 GATGAAGGCAAGCGTGTAGCTGAGACCTTGATGTTTGACTACCATAGGCAGCATGGAATT 726
|| ||||||||||| ||||| || |||||||||||||||||||| || || ||||| |||
Sbjct 565 GACGAAGGCAAGCGGGTAGCCGAAACCTTGATGTTTGACTACCACAGACAACATGGCATT 624
Query 727 GAAATCCGCATTGCCAGAATCTTCAACACTTATGGTCCACGCATGAACATTGATGATGGC 786
|||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||
Sbjct 625 GAAATCCGCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGG 684
Query 787 CGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGTGGTGAGGCATTGACTGTTCAGAAA 846
|||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 685 CGTGTTGTGAGCAACTTCATTGCTCAAGCACTCCGGGGTGAGGCATTGACAGTTCAGAAA 744
Query 847 CCAGGGACACAGACACGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGC 906
|| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 745 CCGGGGACACAGACCCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGT 804
Query 907 CTCATGGAAGG-AGATGACACTGGTCCC-ATCAACATCGGTAACCCAGGTGAGTTTACCA 964
|| |||||||| | |||| ||||| ||| |||||||||||||||||||||||||| || |
Sbjct 805 CTTATGGAAGGCA-ATGATACTGG-CCCTATCAACATCGGTAACCCAGGTGAGTTCACAA 862
Query 965 TGGTGGAACTTGCTGAGACAGTGAAGGAGCTGATTAACCCGAGCATAGAGATAAAGATGG 1024
|||||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||
Sbjct 863 TGGTGGAACTGGCTGAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGG 922
Query 1025 TTGAGAACACACCGGATGATCCAAGACAGAGGAAGCCGGACATCAC-AAAGGCTAAAGAA 1083
| ||||||||||| |||||||||||||||||||| || ||||| | |||| | ||||||
Sbjct 923 TGGAGAACACACCAGATGATCCAAGACAGAGGAAACCAGACATTAGTAAAGCC-AAAGAA 981
Query 1084 GTGTTGGGATGGGAACCAAAGGTGAAGCTTC-GTGAAGGCCTTCCCCTTATGGAAGAAGA 1142
|||||||| ||||| |||||||||||||| | | ||||| ||||| || |||||||||||
Sbjct 982 GTGTTGGGTTGGGAGCCAAAGGTGAAGCT-CAGAGAAGGACTTCCTCTCATGGAAGAAGA 1040
Query 1143 CTTCAGGCTAAGGCTCGGA-GTCCCCAAGAA-CTAAAAC 1179
||| | |||||||| | ||||| ||||| |||||||
Sbjct 1041 TTTCCGACTAAGGCTTA-ACGTCCC-AAGAAACTAAAAC 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5