BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485026

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46560.1 | Symbols: TIM9, emb2474 | Tim10/DDP family zinc fi...   654    0.0  


> AT3G46560.1 | Symbols: TIM9, emb2474 | Tim10/DDP family zinc 
finger protein | chr3:17138587-17139512 FORWARD LENGTH=538
Length=538

 Score =  654 bits (354),  Expect = 0.0
 Identities = 440/478 (92%), Gaps = 20/478 (4%)
 Strand=Plus/Plus

Query  23   GAAGAAAAATGGACGCGAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAG  82
            ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  39   GAA-AAAAATGGACGCAAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAG  97

Query  83   CCACAATGGCCTCCATGATCGATCAGCTTCAGCTACGCGACAGCTTGAAGATGTACAATT  142
            ||| |||||||||||||||||||||||||||||| || || || |||| |||||||||||
Sbjct  98   CCAAAATGGCCTCCATGATCGATCAGCTTCAGCTCCGTGATAGTTTGAGGATGTACAATT  157

Query  143  CATTGGTGGAGAGGTGTTTTGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGA  202
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  158  CATTGGTGGAGAGGTGTTTCGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGA  217

Query  203  AACAAGAGGAGACTTGTGTTATGCGGTGTGCTGAGAAGTTCCTTAAGCATACGATGCGTG  262
            ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct  218  AACAAGAGGAGACTTGTGTGATGCGTTGCGCTGAGAAGTTCCTTAAGCATACGATGCGTG  277

Query  263  TTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGA-A-ACTCTGC  320
            |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct  278  TTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGATATAGTCTGC  337

Query  321  TTCTTCAGTTTGGTTTTG--GTACGGTTTATGAGTCCGAAACCAGAATAAACCGGTTGTT  378
            || ||| ||||||||||   |||||||||| |||||||||||||||||||||||||||||
Sbjct  338  TTTTTCTGTTTGGTTTTTTCGTACGGTTTACGAGTCCGAAACCAGAATAAACCGGTTGTT  397

Query  379  AGTTGTTCAGGTTACT-CT--GATACTGtttttttGAACATCAACTCTTGTACTGTGAAA  435
            |||||||||||||||| ||  ||||||||||||| |||||||   | | |||||||||||
Sbjct  398  AGTTGTTCAGGTTACTACTCCGATACTGTTTTTT-GAACATC---T-T-GTACTGTGAAA  451

Query  436  TTATTTTGACTAAATCCAGTTCTGATATTGAT-TTG--T---ATTTCAATGGAGTCTA  487
            |||||||||||  ||||||||||||||||||| |||  |   ||||||||||||||||
Sbjct  452  TTATTTTGACTGTATCCAGTTCTGATATTGATATTGACTTGTATTTCAATGGAGTCTA  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5