BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485028
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46580.1 | Symbols: MBD05, MBD5, ATMBD5 | methyl-CPG-binding... 1149 0.0
> AT3G46580.1 | Symbols: MBD05, MBD5, ATMBD5 | methyl-CPG-binding
domain protein 5 | chr3:17148342-17149589 FORWARD LENGTH=865
Length=865
Score = 1149 bits (622), Expect = 0.0
Identities = 774/846 (91%), Gaps = 15/846 (2%)
Strand=Plus/Plus
Query 1 CATTCCTTTCTCTCGAGACCTCCACAGGG-TTGGTTCCGGAAATGTCGAACGGCCCAGAT 59
||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||| | |||
Sbjct 14 CATACCTTTCTCTGGAGACCTCCACAGGGTTTGTTTCCGGAAATGTCGAACGGCACGGAT 73
Query 60 CAGGCTCAACCACCGCCGGAAAACACAGCTAATCCGGTAGATTCGAAGTCACGGAAGCGT 119
|||||||||||||| ||||| ||| | |||| |||||| ||||||||||||||||| |||
Sbjct 74 CAGGCTCAACCACCACCGGAGAACCCGGCTACTCCGGTGGATTCGAAGTCACGGAAACGT 133
Query 120 GCGACGCCTGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAGTTAGGGTTCGA 179
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 134 GCGACGCCAGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAATTAGGGTTCGA 193
Query 180 ACCTCTGGCACTAAAGCTGGTACTGTCGATAAGTTCTACTACGAACCGATTACGGGTCGT 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 194 ACCTCTGGCACTAAAGCTGGTACTGTTGATAAGTTCTACTACGAACCGATTACGGGTCGT 253
Query 240 AAGTTCCGGTCCAAGAACGAGGTTTTGTACTACTTGGAACACGGGATACCTAAAAAG--G 297
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 254 AAGTTCCGGTCCAAGAACGAGGTTTTGTACTATTTGGAACACGGGACGCCTAAAAAGAAG 313
Query 298 -CCGTCAAGAAAGCGGAAAACGGAGACTCGCTTTCCGAACATTCTGAAGGTCGAGGAAGC 356
||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 314 TCCGTCAAGACAGCGGAAAACGGAGACTCACATTCCGAACATTCTGAAGGTAGAGGAAGC 373
Query 357 ATTAGGCGGCAGACCAAATCCAACAAAAAAGCTAATGAGCCACCGCCAAAGCCATTGAAC 416
|||||||||||| |||||||||||||| | || |||||||||||||||||| ||||||
Sbjct 374 GCTAGGCGGCAGACAAAATCCAACAAAAAGGTTACTGAGCCACCGCCAAAGCCGTTGAAC 433
Query 417 TTTGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGTATAAACGGTTCAGAAGAA 476
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 434 TTCGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGGATAAACGGTTCAGAAGAA 493
Query 477 GCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCCGTCAGCCAAGATTGGGGC 536
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 494 GCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCTGTCAGCCAAGATTGGGAC 553
Query 537 AGAGCATTCACTCTAGTCACCACCCAAAACGCCGGAACAACGATGTTTTAAAAGATTGCT 596
|||| ||||||||| |||||| |||||||||| |||| ||||||||| || |||||||||
Sbjct 554 AGAGTATTCACTCTTGTCACCTCCCAAAACGCTGGAAAAACGATGTTCTAGAAGATTGCT 613
Query 597 GCAGCAACTCACATCAAAATGTAATAACACAAGCCGCTAGATAATCATATCTACTTAGTA 656
|||| |||||||| || ||||||||||| || ||||||| |||||||||||||||||
Sbjct 614 GCAGAAACTCACA--AAT-TGTAATAACACGCGCTGCTAGATTATCATATCTACTTAGTA 670
Query 657 TTGACTGATCTTTGGTTGGAATGCAGGTTAATTT---AGTTGTGATAGTTT-AGTAACAC 712
|| ||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 671 TTTACTGATCGTTGGTTGGAATGCAGGTTAATTTTTTAGTAGTGATAGTTTTAGTAACAC 730
Query 713 TTCAATTTGAGTTGTAATCTACATT-TTAAACGTTTTCTTAGGTAATTTGAAGGCAATGT 771
|| |||||||||||||| ||| || |||| | ||||||||| |||||||||||||||||
Sbjct 731 TTTGATTTGAGTTGTAATGTACTTTCTTAA-CATTTTCTTAGATAATTTGAAGGCAATGT 789
Query 772 ATGTCAATATTATTGCCTTTGAGA-AACTCCGTTAGTAACAAAGTTATGAAATCTAAAGT 830
||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 790 ATGTCTATATTATTGCCTTTGAGAGAA-TCCGATAGTAACAAAGTTATGAAATCTAAAGT 848
Query 831 TCGATG 836
||||||
Sbjct 849 TCGATG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5