BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485029
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46590.2 | Symbols: TRFL1, ATTRP2 | TRF-like 1 | chr3:171527... 2832 0.0
AT5G59430.1 | Symbols: ATTRP1, TRP1 | telomeric repeat binding ... 516 4e-145
> AT3G46590.2 | Symbols: TRFL1, ATTRP2 | TRF-like 1 | chr3:17152775-17156227
FORWARD LENGTH=2319
Length=2319
Score = 2832 bits (1533), Expect = 0.0
Identities = 1858/2007 (93%), Gaps = 54/2007 (3%)
Strand=Plus/Plus
Query 198 TATTGTCTTGGAACTGAAGATTCATCGAAAGGTGAGAAAGATTCGTGAGTTTCATTCATT 257
|||||||||||||||||||||||||| |||||||| |||||||| |||| |
Sbjct 279 TATTGTCTTGGAACTGAAGATTCATC---------GAAAGATTGGTGAGTTTTATTCGCT 329
Query 258 GCTTCTCGCGTGTGGTAATCACATAAT-TGTGTTATGCATCCAAGTAATGGTGTCGCATA 316
|||| |||| ||||| |||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 330 GCTTATCGCTTGTGGCAATCACATCATCTGTGTTATGCATCCAAGTAATGGTGTCACATA 389
Query 317 AAGTCTTAGAATTTGGAGATGATGGTTACAAATTGCCTGCTCAAGCTCGAGCTCCGAGAT 376
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 390 AAGTCTTAGAATTTGGAGATGATGGTTACAAATTACCTGCTCAAGCTCGAGCTCCGAGAT 449
Query 377 CAGTCCGGAAGAAGCGCATTTACGAAAAGAAGATACCAGGAGATGATAAGATGTGCGCAA 436
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 450 CACTCCGGAAGAAGCGCATTTACGAAAAGAAGATACCAGGAGATGATAAGATGTGCGCGA 509
Query 437 TTGACTTATTGGCCACCGTAGCTGGAAGTTTGCTACTCGAGAGCGAAAGTTCGGTAAATG 496
|||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 510 TTGACTTATTGGCCACCGTAGCTGGAAGCTTGCTTCTCGAGAGCAAAAGTCCGGTAAA-- 567
Query 497 CGTGTGTAGTAGTTGTACAAAATACTGTAAAGAAGGAATTCCCGGCTGAAGAAAACCCCG 556
|| |||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 568 CGCGTGT-CTAGTTGTACAAAATACTGTAAAGAATGAATACCCGGCTGATGAAAACCCCG 626
Query 557 TAAAGGC-GTTACCTTATTCGGAATCCCCGAGGCTATTTGACAATGGCCAGTGTGGATTT 615
||||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 627 TAAAGGCGGTT-CCTTATTCGGAATCCCCGAGCCTATTTGACAATGGCAAGTGTGGATTT 685
Query 616 AGCTCTGTGATAACAAATCCTAATCACTTGTTGGTAGGTGACAAAGTAGAAAAGGAGGTG 675
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 686 AGCTCTGTGATAACAAATCCTAATCACTTGTTGGTAGGTGACAAAGTAGGAAAGGAGGTG 745
Query 676 CAGGGTTTTAGTAGCTTGGGTGTGAATGGTGATGTAAAGCCTGATATTGTAGCTAGTATA 735
||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 746 GAGGGTTTTAGTAGTTTGGGTGTGAGTGGTGATGTAAAGCCTGATGTTGTAGCTAGTATA 805
Query 736 GGTAGTAACAGTAGTACCGAGGTCGGAGCATGTGGGAACGGTAGTCCCAATG-GTTCTCG 794
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||
Sbjct 806 GGTAGTAACAGTAGTACCGAGGTGGGAGCATGTGGGAACGGTAGTCCCAACGAG-TCTCG 864
Query 795 GGATGATGTAAATTTATTTAGTAGAAATGATGATGATGAAAACTTCTCTGGG-TACATTC 853
||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 865 GGATGATGTAAATTTGTTTAGTAGAAATGATGATGATGAAAACTTTTC-GGGTTACATTC 923
Query 854 GCCCTCGTATGAATAGGCCTGTGCCTCGAATTGGAGACAGAAGAATCAGGAAGATATTGG 913
| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 924 GAACTCGTATGACTAGGCCTGTGCCTCGTATTGGAGACAGAAGAATTAGGAAGATATTGG 983
Query 914 CATCTAGACATTGG-AA--A-----G--G--------AGATGCAAAGCCATGGTATTGCT 955
|||||||||||||| || | | | |||||||||||||||||||||||
Sbjct 984 CATCTAGACATTGGAAAGGAGGTTCGAAGAACAACACAGATGCAAAGCCATGGTATTGCT 1043
Query 956 CAAAGAGGAGTTATTACTTGCACCATCATCAGAGGAGTTATCCCATCAAGAAAAGGAAAT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CAAAGAGGAGTTATTACTTGCACCATCATCAGAGGAGTTATCCCATCAAGAAAAGGAAAT 1103
Query 1016 ACTTTGACAGCATTTCCGATTCGAACTCTGATGATTACCGTTTGCAAGGAAAAACACGTA 1075
|||||||||| ||| ||| |||||||||||||||||||||||||||||||| || | ||
Sbjct 1104 ACTTTGACAGTGTTTACGACTCGAACTCTGATGATTACCGTTTGCAAGGAAAGACTCATA 1163
Query 1076 AAGGAAGCAGAACAATATCTTCCATGAAAAGTCGAAATGCTTCCTTTGTGTCAAGGGACC 1135
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1164 AAGGAAGCAGAACAATATCTTCCATGAAAAGTCGAAATGCGTCCTTTGTGTCAAGGGATC 1223
Query 1136 ATCATGTGAGGCTGCGGATCAAGTCTTTCAGGGTGCCTGAGCTTTTTATAGAGATTCCAG 1195
||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1224 ATCATGTGAAGCTGCGGATCAAGTCTTTTAGGGTGCCTGAGCTTTTCGTAGAGATTCCAG 1283
Query 1196 AAACTGCTACTGTTGGCTCCTTGAAGCGGATGGTGATGGAAGCAGTGACTACCATACTGG 1255
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1284 AAACTGCTACTGTTGGCTCCTTGAAGCGGATGGTGATGGAAGCAGTGACCACCATACTGG 1343
Query 1256 GTGATGGACTCCGAGTCGGGCTGATGGTTCAAGGAAAGAAAGTCCGAGATGATAGCAAAA 1315
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1344 GTGATGGACTTCGAGTCGGGCTGATGGTTCAAGGAAAGAAAGTCCGAGATGATGGCAAAA 1403
Query 1316 CTCTTCTTCAGACTGGGATTTCTGAGGAGAACAACCACTTGGATTCTCTGGGTTTCTGCC 1375
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 1404 CTCTTCTTCAGACTGGGATCTCTGAGGAGAACAACCACTTGGATTCTCTTGGTTTCAGCC 1463
Query 1376 TTGAGCCCAGCTTAGAAACTACCCCTCAACCGCTGTCATCCAGTTATCTGTCAGAGCATG 1435
|||| || |||||||| || ||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1464 TTGAACCTAGCTTAGAGACCACCCCTCAACCACTGTTATCCAGTTATCTGTCAGATCATG 1523
Query 1436 CATGTGATGATTTGACATTATGCCACGACAATGCCTTGGATTCTAGTCATCAGCCAGCAG 1495
| ||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1524 CCTGTGATGATGTGACGTTATGCCACGACAATGCGTTGGATTCTAGTCATGAGCCAG-A- 1581
Query 1496 CACCATCCCCAGCTGACTCATTTGGAAAACTAGGCACAACG-GATCATTCTAGAGCTTTG 1554
|||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 1582 -ACCATCCCCAGCTGACTCATTTGGGAAACTAGGCACAA-GTGATCATTCTAGAGCTTTG 1639
Query 1555 ATTCCTGTTGTGTCAGCAGCAATGTTGGCTCCTCGGCCTCCTAACCGTAAGTTTAAAAGG 1614
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1640 ATTCCTGTTGCCTCAGCAGCAATGCTGGCTCCTCGGCCTCCTAACCGTAAGTTTAAAAGG 1699
Query 1615 ACTGAGCAGCAGCTAGCTGCACAGCGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTA 1674
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1700 ACTGAGCAGCAGCTAGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTA 1759
Query 1675 GAAGCACTGGTCCAAGCCGTTGAGCATCTTGGAACCGGAAGGTGGAGAGACGTTAAGGTT 1734
|||||||||||||||||||||||| | || |||||||||||||||||||| || ||||||
Sbjct 1760 GAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGGTGGAGAGATGTGAAGGTT 1819
Query 1735 CGTGCTTTTGAGGACGCAGACCACCGTACCTATGTTGATCTCAAGGATAAGTGGAAGACG 1794
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1820 CGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAGGATAAGTGGAAGACG 1879
Query 1795 CTAGTCCACACGGCAAGGATATCGCCACAGCAGCGGAGAGGAGAGCCCGTGCCACAGGAA 1854
|| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1880 CTGGTCCACACGGCAAGGATATCTCCACAACAGCGGAGAGGAGAGCCGGTGCCACAGGAA 1939
Query 1855 CTTCTGGACCGTGTTCTGAAGGCACACGCTTACTGGTCACAACACCTAATGCATCAACTG 1914
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 CTTCTGGACCGTGTTTTGAAGGCACACGCTTACTGGTCACAACACCTAATGCATCAACTG 1999
Query 1915 CAGACTGAGCCACCATCTTCTCAGGTAGAGGCTCT--AATCTGAACAGGTTCTTCTTGTT 1972
||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 2000 CAGACTGAGCCACCATCCACTCAGGTAGAGGCTCTCTAATCTGAACAGGTTCTTG--GT- 2056
Query 1973 CTAAAGAACCTTTGTGTATTATTATGATGATCCATATTGTAAGATTCTGACATAGTTGAA 2032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 CTAAAGAACCTTTGTGTATTATTATGATGATCCATATTGTAAGATTCTGACATAGTTGAA 2116
Query 2033 GATATGGTCTCAGTTCTTCTT-GtttttttttCTTCTATCTTTCAAGTGTAAAGTTTTAT 2091
||| ||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||
Sbjct 2117 GATCTGGTCTCAGTTCTTCTTTGTTTTTTTTT-TTCTTTCTTTCAAATGTAAAGTTTTAT 2175
Query 2092 AATTGGAA-TAAGGTTGTGttttttttttCTAACAATGTAAAGGATTTGTTGTAAATCTT 2150
|||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2176 AATTGGAAATAAGGTTGGGTTTTTT----CTAACAATGTAAAGGATTTGTTGTAAATCTT 2231
Query 2151 TGATTACATTTTTATTCTCTCTATATG 2177
|| | ||||||||||||| ||||||||
Sbjct 2232 TGGTGACATTTTTATTCTGTCTATATG 2258
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 169 TGATTCCTTCGTCTCCGATCTCTCATTTTT 198
||||||||||||||||||||||||||||||
Sbjct 217 TGATTCCTTCGTCTCCGATCTCTCATTTTT 246
> AT5G59430.1 | Symbols: ATTRP1, TRP1 | telomeric repeat binding
protein 1 | chr5:23967611-23970945 FORWARD LENGTH=2162
Length=2162
Score = 516 bits (279), Expect = 4e-145
Identities = 965/1275 (76%), Gaps = 132/1275 (10%)
Strand=Plus/Plus
Query 715 CCTGATATTGTAGCTAGTATAGGTAGTAACAGTAGTACCGAGGTCG-GAGC-ATGTGGGA 772
||| || |||||| |||| ||||||||| ||||| ||||| || | | | || |||||
Sbjct 632 CCTAATGTTGTAGTTAGTTTAGGTAGTAGTAGTAGAACCGAAGT-GCCATCAAT-TGGGA 689
Query 773 AC-G-GTAGTCCCAATGG-TTCTCGGGATGATGTAAATTTATTTAGTAGAAATGATGATG 829
|| | || |||| |||| | |||||||||||||||||| |||||||| | |||||||
Sbjct 690 ACTGTGT-TTCCC-ATGGCGT-TCGGGATGATGTAAATTTGTTTAGTAG--A-GATGATG 743
Query 830 ATGAAAACTTCTCTGGGTACATTCGCCCTC--G-T-------A-TGA-ATAGGCCTGTGC 877
|||||||||| || |||||||| ||| | | | | | | |||| |||| |
Sbjct 744 ATGAAAACTTTTCCAAGTACATTCACCCGCGTGTTACAAAACATTCACCTAGGACTGTAC 803
Query 878 CTCGAATTGGAGACAGAAGAATCAGGAAGATATTGGCATCTAGACATTGGAAAGGAGATG 937
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 804 CTCGTATTGGGGACAGAAGAATCAGGAAGATATTGGCTTCTAGACATTGGAAAGGAGGTT 863
Query 938 CAAAGCCA-T-GGTATTGCTCAAA--GAGGAG---TTATTACTTGCACCATCATCAGAGG 990
| ||| || | | | | | ||| | |||| |||||||||||| | || ||||||
Sbjct 864 C-AAGGCATTCAG-A-TAC-GAAACCGTGGAGAAATTATTACTTGCA-C--CAGCAGAGG 916
Query 991 AGTTATCCCATCAAGAAAAGGAAATACTTTGA-CAGCATTTCCGATT-CGAACT-CTGAT 1047
|| ||||| ||||||||||||||| ||||||| || ||| || |||| || | |||||
Sbjct 917 AGCTATCCTATCAAGAAAAGGAAAAACTTTGACCA-CATATCTGATTCCG--TTACTGAT 973
Query 1048 GATTACCGTTTGCAAGGAAAAACACGTAAAGGAAGCAGAACAATATCTTCCATGAAAA-G 1106
||||||||| ||| | || | || || ||| | | | | | ||||| |
Sbjct 974 GATTACCGTATGC---G-----TAC-T-AA-GATGCA-TA-GAGGTAGT--A-GAAAAGG 1017
Query 1107 TCGAA-ATGCTTCCTTTGTGTCAAGGGAC-CATCATGTGAGGCTGCGGATCAAGTCTTTC 1164
|| || || ||||||||| |||| ||| | ||||||| || ||||||||||| |||
Sbjct 1018 TC-AAGGGGCATCCTTTGTGGCAAGCGACTC-CCATGTGAAACTACGGATCAAGTCGTTC 1075
Query 1165 AGGGTGCCTGAGCTTTTTATAGAGATTCCAGAAACTGCTACTGTTGGCTCCTTGAAGCGG 1224
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 1076 AGGGTGCCTGAGCTTTTCATAGAGATTCCAGAAACTGCTACTGTTGGCTCATTGAAGAGA 1135
Query 1225 ATGGTGATGGAAGCAGTGA-CTACCATACTGGGTGATGGACTCCGAGTCGGGCTGATGGT 1283
||||||||||||||||||| | || ||||| ||||||||| |||||| || ||||||||
Sbjct 1136 ATGGTGATGGAAGCAGTGAGC-ACTTTACTGAGTGATGGACACCGAGTTGGTCTGATGGT 1194
Query 1284 TCAAGGAAAGAAAGTCCGAGATGATAGCAAAACTCTTCTTCAGACTGGGATTTCTGAGGA 1343
||| || ||||||||||| || |||| |||||| |||| ||||||||| || ||| ||||
Sbjct 1195 TCAGGGGAAGAAAGTCCGTGACGATAACAAAACCCTTCATCAGACTGGTATCTCTCAGGA 1254
Query 1344 GAACAACCACTTGGATTCTCTGGGTTTCT-GCCTTGAGCCCAGCTTAGAAACTACCCCTC 1402
||| |||| |||| ||||| | ||| | ||||||| ||||||| ||||| | || ||
Sbjct 1255 TAACTCCCACCTGGACTCTCTTGATTT-TAGCCTTGAACCCAGCTCAGAAA-TGCC--TC 1310
Query 1403 AACCGCTGTCATCCAGTTATCTGTCAG-AGCATGCATGTGATGATTTG--ACAT-TATGC 1458
||| | | | | | ||| | | || | | ||||| ||||| || || || | | |||
Sbjct 1311 AACTG-T-TAA-CTAGTCACCCGTTGGGA-CATGCTTGTGAGGAGCTGCTACCTGTGTGC 1366
Query 1459 CACG--AC-AA--T-GCC--T-TG--G-ATTCTAGTC-ATCA-GCCAGCAGCACCATCCC 1504
|| | || || | | | | || | | ||| | | |||| | | ||||| || ||
Sbjct 1367 CAAGCTACTAAAATAGACAATGTGTTGGAATCT-GACCATCATGACT-CAGCATTATTCC 1424
Query 1505 CAGCTGACTCATTTGG-AA-AACTA--G-GCACAACGGATCATTCTAGAGCTTTGATTCC 1559
|| |||||||||| || || || || | | ||| | | |||||| |||| ||||| |
Sbjct 1425 CATCTGACTCATTAGGCAACAA-TAATGTG-ACA--GAAG-ATTCTAAAGCTATGATTTC 1479
Query 1560 TGTTGTG-TCAGCAGCAAT-GT-TGGCTCC-TCGG--CCTCCTAACCGTAAGTTTAAAAG 1613
||| | | ||| | | ||| || | ||| || || ||| ||| || | || |||
Sbjct 1480 TGTGGCGCTCAAC-G-AATTGTCTT-CTCAATCACAACCACCTTCCCGGAAATCTAGAAG 1536
Query 1614 GACTGAGCAGCAGCTAGCTGCA--CAGCGCA--G-A-A-TTCGTCGACCTTTCTCAGTTA 1666
| ||| ||||||| ||| ||| | || || | | | ||||||||||||||||||||
Sbjct 1537 AAGTGAACAGCAGC-AGCAGCAGGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTG 1595
Query 1667 CTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGCATCTTGGAACCGGAAGGTGGAGAGACG 1726
|||||||||||||||| || ||||| |||||| | || || || |||||||||||||| |
Sbjct 1596 CTGAAGTAGAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGGTGGAGAGATG 1655
Query 1727 TTAAGGTTCGTGCTTTTGAGGACGCAGACCACCGTACCTATGTTGATCTCAAGGATAAGT 1786
||||| || ||||||| ||||| || |||||||| || || || |||||||||||||| |
Sbjct 1656 TTAAGCTTTGTGCTTTCGAGGATGCTGACCACCGCACTTACGTAGATCTCAAGGATAAAT 1715
Query 1787 GGAAGACGCTAGTCCACACGGC-AAGGATATCGCCACAGCAGCGGAGAGGAGAGCCCGTG 1845
|||| ||||| ||||||||||| ||| ||||| ||||| ||| ||||||||||||| |||
Sbjct 1716 GGAAAACGCTGGTCCACACGGCTAAG-ATATCTCCACAACAGAGGAGAGGAGAGCCAGTG 1774
Query 1846 CCACAGGAACTTCTGGACCGTGTTCT-GAAGGCACACG-CTTACTGGTCACAACACCTA- 1902
|| ||||||||||| |||| || || ||| || || | || ||||| | || || | |
Sbjct 1775 CCGCAGGAACTTCTAAACCGAGT-CTTGAACGCCCATGGCT-ACTGGACGCAGCAAC-AG 1831
Query 1903 ATGCATCAACTGCAG 1917
||||| || ||||||
Sbjct 1832 ATGCAGCAGCTGCAG 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107981372295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5