BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485035
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46620.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 1973 0.0
> AT3G46620.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:17178697-17180067 REVERSE LENGTH=1371
Length=1371
Score = 1973 bits (1068), Expect = 0.0
Identities = 1280/1377 (93%), Gaps = 35/1377 (3%)
Strand=Plus/Plus
Query 1 AACTTCAGATCCTTTCACCAGCAACACAAGTT-TTTTCAAAAGATGATGCCAAATTCTAG 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AACTTCAGATCCTTTCACCAGCAACACAAGTTATTTTCAAAAGATGATGCCAAATTCTAG 60
Query 60 ATCGGCGACAATATCTCCGACGACAGAATC-A--A-C-C-AC--C-ACAACAACAACGAC 110
||||||||||||| |||||||||||||||| | | | | || | ||||||||||||||
Sbjct 61 ATCGGCGACAATAACTCCGACGACAGAATCAACCACCACAACAACAACAACAACAACGAC 120
Query 111 TCCGGCGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTTTGGGATGATCA 170
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TCTAACGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTTTGGGAAGATCA 180
Query 171 AGACGCAAACGCTGGAGTCTTATGTCCTTATTGCGACGGAGGTTTCATCGAAGAGATTGA 230
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 181 AGACGCAAACGCTGGAGTCTTATGTCCTTATTGCAACGGTGGATTCATCGAAGAGATTGA 240
Query 231 AGATTCTTCTAATTCTC-CCGCCGCGGCGATTCCGG-TTACGGCTCCGGAAGTTAGATCG 288
||||||||||||||| | ||| |||||||||||||| || || |||||||||||||||||
Sbjct 241 AGATTCTTCTAATTC-CACCGTCGCGGCGATTCCGGCTT-CGACTCCGGAAGTTAGATCG 298
Query 289 GTTGAAGATATTCATAGATCTGTAATTAGACGGCGGAGATCTGGTCGTCGTACATCGTTT 348
||||| || | ||||||||| |||||||||| || |||||| ||| || || || |||
Sbjct 299 GTTGAGGAAACACATAGATCTATAATTAGACGTCGTAGATCTAATCGCCGGACGTCCTTT 358
Query 349 AATCCGGTAATCGTCTTACACggaggaggaggaggagga---ggagATAGAGTTGAGAAC 405
||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||
Sbjct 359 AATCCGGTAATCGTCTTACACGGCGGAGGAGGAGGAGGAGCCGGTGAGAGAGTTGAGAAC 418
Query 406 GAAGAAGGAGACGAAGCTACTAGAGAACGACGAGCTTATGAGTTTTATTACGATGATGGA 465
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAGAAGGTGACGGAGCTACTAGAGAACGACGAGCTTATGAGTTTTATTACGATGATGGA 478
Query 466 TCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTATCTGAGATCTTAATGGGATCTGGA 525
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 TCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTATCTGAGATCTTGATGGGATCTGGA 538
Query 526 TTTGAACGATTACTTGAACAATTGAGTCAGATCGAAGCGTCAGGTAACGGAATCGGTAGA 585
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCGAACGGTTACTTGAACAATTGAGTCAGATCGAAGCGTCAGGTAACGGAATCGGTAGA 598
Query 586 TCTGGTAATCCACCGGCGTCGAAATCAGCGATTGAATCTTTACCTAGAATCGAGATCTCA 645
||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 599 TCTGGGAATCCACCGGCGTCGAAATCAGCGATTGAATCTTTACCTAGAGTCGAAATCTCA 658
Query 646 GATTGTCACATGAAAGCGGAAGCGAATTGCGCCGTGTGTACGGAGGTTTTCGAAGCCGGA 705
|||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 GATTGTCATACGAAAGCAGAAGCTAATTGCGCCGTGTGTACGGAGGTTTTCGAAGCCGGA 718
Query 706 ATCGAAGGTCGTGAGATGCCGTGTAAACATATATTTCACGGCGATTGTATTGTTCCATGG 765
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 719 ATCGAAGGTCGTGAGATGCCGTGTAAACACATATTTCACGGTGATTGTATTGTTCCATGG 778
Query 766 CTTTCGATTCGGAATTCGTGTCCTGTGTGTAGATTTGAATTACCTTCAGATCCAATTCAA 825
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 779 CTTTCGATTCGGAATTCGTGTCCTGTGTGTAGATTTGAGTTACCTTCAGATCCAATCCAA 838
Query 826 CGGAGTAATGAAGAAGAACATGCTGTTGGGATGACGATTTGGAGATTACCAGGTGGTGGA 885
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 839 CGGAGTAATGAAGAAGAACATGCCGTTGGGATGACGATTTGGAGATTACCTGGTGGTGGT 898
Query 886 TTCGCTGTTGGGAGGTTTAACGCGGGGGTGAGAGAAGGAGAGAGGATTTTGCCGGTGGTT 945
||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 899 TTCGCTGTTGGTAGGTTTAACGCGGGAGTGAGAGAAGGTGAGAGGATATTGCCGGTGGTA 958
Query 946 TTGACGGAGATGGATGGTGGTGGACTTGGTAGTAATGAAGGACCGAGAAGGATTTCTTGG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 TTGACGGAGATGGATGGTGGTGGACTTGGTAGTAATGAAGGACCGAGAAGGATATCTTGG 1018
Query 1006 GTTAGAGCTCATGAGACACCGGAGATGAGTAGGAATGGTGGTCGTTCTGGTAATGGTGGT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTAGAGCTCATGAGACACCGGAGATGAGTAGGAATGGTGGTCGTTCTGGTAATGGTGGT 1078
Query 1066 AGATTGAGAAGAGCTGTTCGTGGAATGGTTTCGTTTATGAGAAGAGTGAGACCAAATCGT 1125
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1079 AGATTGAGAAGAGCTGTTCGTGGAATGGTTTCGTTTATGAGAAGAGTTAGACCAAGTCGT 1138
Query 1126 CGCTCTTCGAATTCGAATTCGAATCTTATTGATTTGGATAGTGATGGTGAAACTAGAGTT 1185
||||||||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1139 GGCTCTTCGAATTCGAAT--G--T-T-ATTGATTTGGATAGTGATGGTGAAACTAGAGTT 1192
Query 1186 ATGAATCGATCAACTTCGTTGATCAGAAGATTTTTCTGATGGAAACTGGAGTTGAGAttt 1245
||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||
Sbjct 1193 ATGAATCGATCAACTTCGTTGATCAGAAGATTTTTCTGATG-AAACTAG-GT-GAGATTT 1249
Query 1246 ttttGTTTGTTGATTCAACAATGTGTATATAATTATTCAGATGAAACT-ATTTGGAACAT 1304
|||||||||||||||||||||||| |||||| ||||| ||||||| || |||||| || |
Sbjct 1250 TTTTGTTTGTTGATTCAACAATGTATATATATTTATTTAGATGAA-CTTATTTGGTACCT 1308
Query 1305 CT-TTGTTACATCAAATTTAT-TG-----GAAACCAAATGTCAAATTCATTATTCTT 1354
|| |||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1309 CTCTTGTTACATCAAATTTATGTGAAACAGAAAAAAAATGTCAAATTCATTATTCTT 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5