BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485038
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46640.3 | Symbols: PCL1 | Homeodomain-like superfamily prot... 1445 0.0
AT5G59570.1 | Symbols: | Homeodomain-like superfamily protein ... 313 4e-84
> AT3G46640.3 | Symbols: PCL1 | Homeodomain-like superfamily protein
| chr3:17183070-17185218 FORWARD LENGTH=1382
Length=1382
Score = 1445 bits (782), Expect = 0.0
Identities = 966/1051 (92%), Gaps = 28/1051 (3%)
Strand=Plus/Plus
Query 1 GTTTCACTTCTG-aaaaaaaaaaaaaaaaaaTTG-TTGCTCATCATCGTCACCAAACCAA 58
|||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 21 GTTTCACTTCTGAAAAAAAAAAAAAAAAAAATTGTTTGCTCATCATCTTCA-CAAACCAA 79
Query 59 ACTTCTC-TCTTTCTCCGATCTCCGATTCGAAATTTTCATCGATTTTGAGCTTCAAAGA- 116
||||||| || |||||||||||| |||| | |||||| |||||||||||||||| ||||
Sbjct 80 ACTTCTCTTC-TTCTCCGATCTCAGATTTG-AATTTTTATCGATTTTGAGCTTCGAAGAG 137
Query 117 CTTCAATCTCTAACTGAATTTCAAGAAATTAGAGAGTTTAAAATGGGAGAGGAAGTACAA 176
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 138 C-TCAATCTCTAACTGAATTTCGAGAAATTAGAGAGTTTGAAATGGGAGAGGAAGTACAA 196
Query 177 ATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGACTA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 197 ATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGATTA 256
Query 237 CCTAGCGACGAAGATCTAGCATCGCTCTCTTACTCTCTGATTCCGCCGAATTTGGCTATG 296
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 257 CCAAGCGACGAAGATCTAGCATCTCTTTCTTACTCTCTGATTCCACCGAATTTGGCGATG 316
Query 297 GCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAG 376
Query 357 ACGACGTTCTCCTCGCTGTGTGGCGGATCTTCCGGTCAAAATACCTCATCGTCGAATAAT 416
|||||| |||| ||||| |||| |||||||| |||| ||||||||| ||||||||||||
Sbjct 377 ACGACGCTCTCGTCGCTACGTGGTGGATCTTCAGGTCCAAATACCTCGTCGTCGAATAAT 436
Query 417 AACAGCAACGCGGTGGAGGAAGAAGATCGAGTCGGATCGAGTAGTCCTGGATCGGATTCG 476
|| | |||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 437 ------AA--C-GTGGAGGAGGAAGATCGAGTTGGATCTAGCAGTCCTGGATCGGATTCG 487
Query 477 AAGAAGCAGAAGATATCAGACGGCGGTGGTGGTGGCGATGGCGGTGTGGATCCAGA-T-- 533
|||||||| |||| |||| |||| | ||| | || || ||||||||||||||| || |
Sbjct 488 AAGAAGCAAAAGACATCAAACGGTGATGGAGATGACGGTGGCGGTGTGGATCCGGATTCG 547
Query 534 GC---GGCGGTGGAGGAAGGAGATTCAGGAACTGAAGATCTATCTGGGAAAACACTGAAA 590
|| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 548 GCGATGGCGGCGGAAGAAGGAGATTCAGGAACTGAAGATCTATCTGGGAAAACACTTAAA 607
Query 591 CGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTTGCTCAC 650
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 608 CGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCAC 667
Query 651 TTAGGAATCAAAAACGCTGTTCCAAAGACGATTATGCAGCTGATGAACGTTGAAGGATTA 710
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 668 TTAGGGATCAAAAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGATTA 727
Query 711 ACTCGAGAGAACGTTGCGTCTCATCTCCAGAAA-TATAGGCTTTACCTCAAAAGAATGCA 769
||||| |||||||||||||||||||| || ||| |||||||||||||||||||| |||||
Sbjct 728 ACTCGTGAGAACGTTGCGTCTCATCTTCA-AAAGTATAGGCTTTACCTCAAAAGGATGCA 786
Query 770 GGGGTTGACGAACGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTGCC 829
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 787 GGGATTGACTAATGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCC 846
Query 830 TCCACAGAGCTTCCAAGACATCGGTGGCGGTGGCGGTAGCAGCGGTAATGTTGGAGTGCC 889
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCCACAGAGCTTCCAAGATATCGGTGGCGGTGGCGGTAGCAGCGGTAATGTTGGAGTGCC 906
Query 890 AATTCCAGGGCCGTATGGAGCGCAGCCGATGATGCAGATGCCAGTTTATGCACATCATAT 949
||||| ||| |||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 907 GATTCCGGGGGCGTATGGAACGCAACAGATGATGCAGATGCCAGTTTATGCACATCATAT 966
Query 950 GGGTATGCAAGGATatcatcatcaaaatcataatcatgatccttatcatcagaatcatca 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GGGTATGCAAGGATATCATCATCAAAATCATAATCATGATCCTTATCATCAGAATCATCG 1026
Query 1010 tcatcatcatcatGGAGCTGGTGGAAGTGGT 1040
|||||||||| ||||||||||||| ||||
Sbjct 1027 TCATCATCAT---GGAGCTGGTGGAAATGGT 1054
Score = 230 bits (124), Expect = 4e-59
Identities = 182/208 (88%), Gaps = 12/208 (6%)
Strand=Plus/Plus
Query 1232 AAATTTTCATCTGTGT-AGGA-AAGATCATACAAACATATCATGTCCAAGCTAGATCAAG 1289
||| || ||||||| | |||| | ||||||||||| |||||||| |||||| | ||||
Sbjct 1110 AAA-TTGCATCTGT-TCAGGAGAGGATCATACAAA-GTATCATGTAGAAGCTAAACCAAG 1166
Query 1290 AGAAGACCT-CTGACAAATTTCATATACTCA-TTTTCTATCTTGTAAGAGATAAGTAAGT 1347
|||||| || | ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1167 AGAAGA-CTGCAGACAAATTTCATATACTCATTTTTCTATCTTGTAAGAG----GTAAGT 1221
Query 1348 CCCTTTGCTTTATTTGTCTGTAGACTTCTTAGAGTGATAATCAAAAGAGTGAATTGTTTA 1407
||||||| |||||||||||| |||||||||| |||| ||||||| |||||||||||||||
Sbjct 1222 CCCTTTGTTTTATTTGTCTGCAGACTTCTTAAAGTGGTAATCAAGAGAGTGAATTGTTTA 1281
Query 1408 TTTCTGTGAGAGATGGAGTCAGACACAA 1435
|||||||||||||||| |||||||||||
Sbjct 1282 TTTCTGTGAGAGATGGCGTCAGACACAA 1309
> AT5G59570.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:24003888-24005512 FORWARD LENGTH=1451
Length=1451
Score = 313 bits (169), Expect = 4e-84
Identities = 342/421 (81%), Gaps = 29/421 (7%)
Strand=Plus/Plus
Query 441 GATCGAGTCGGATCGAGTAG-TCCTGGATCGGATTCGAAGAAGCAGAAGATATCAGACGG 499
|||||||| | ||||||| | ||| ||||| ||| ||||||| ||||||| ||| | |
Sbjct 439 GATCGAGTTGAATCGAGT-GTTCCAGGATCAGATCCGAAGAAACAGAAGAAATC-G--GA 494
Query 500 CGGTGGTGGTGGCGATGGCGG-TGTGGATCCAGATGCGGCGGTGGAGGAAGGAGATTCAG 558
|||||| | || | |||| ||||| ||| | ||| |||||||||||| || |
Sbjct 495 TGGTGGT-GAAGC-A--GCGGCGGTGGA---GGATTCCACGGCGGAGGAAGGAGACTCCG 547
Query 559 GAACTGAAGATC-TATCTGGGAAAACACT-GAAACGACCGCGTTTAGTGTGGACACCGCA 616
| ||||||| | |||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 548 GGCCTGAAGA-CGCGTCTGGGAAGACA-TCGAAACGACCGCGTTTAGTGTGGACACCGCA 605
Query 617 GCTACACAAGAGATTCGTTGACGTTGTTGCTCA-CTTAGGAATCAAAAACGCTGTTCCAA 675
||||||||||||||| || |||||||| ||||| || ||| || |||||||| || || |
Sbjct 606 GCTACACAAGAGATTTGTGGACGTTGTGGCTCATCT-AGGGATTAAAAACGCAGTGCCGA 664
Query 676 AGACGATTATGCAGCTGATGAACGTTGAAGGA-TTAACTCGAGAGAACGTTGCGTCTCAT 734
||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||
Sbjct 665 AGACGATTATGCAGCTGATGAACGTGGAAGGACTTA-CTCGTGAGAACGTTGCGTCTCAT 723
Query 735 CTCCAGAAATATAGGCTTTACCTCAAAAGAATGCAGGGGTTGACGAACG-AAG--G-TCC 790
| |||||||||||||||||||| ||| | || || || ||||||| || ||| | |||
Sbjct 724 TTGCAGAAATATAGGCTTTACCTTAAACGGATTCAAGGATTGACGA-CGGAAGAAGATCC 782
Query 791 CTCTGC-T--TCGGATAAGCTCTTCTCTTCAACACCTGTGCCTCCACAGAGCTTCCAAGA 847
| | | | |||||| |||||||||||||||| || || |||||||||||||| |||||
Sbjct 783 TTATTCGTCGTCGGATCAGCTCTTCTCTTCAACGCCGGTTCCTCCACAGAGCTTTCAAGA 842
Query 848 C 848
|
Sbjct 843 C 843
Score = 93.5 bits (50), Expect = 5e-18
Identities = 79/92 (86%), Gaps = 5/92 (5%)
Strand=Plus/Plus
Query 1051 CAAATCC-ATATATGATGCAGCAGAATAAGTTTGGATCCATGGCGTCTTATCCTTCTGTT 1109
|||| || |||||||||||||||||||||||||||| | |||| | | ||||||||||||
Sbjct 971 CAAA-CCAATATATGATGCAGCAGAATAAGTTTGGAACAATGGTGACATATCCTTCTGTT 1029
Query 1110 GGTGGTGGT-AGCGCGAATGAGAATTGAAATG 1140
||||||||| | || |||||| || | |||||
Sbjct 1030 GGTGGTGGTGA-CGTGAATGACAAGT-AAATG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5