BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485044
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46750.1 | Symbols: | unknown protein; Has 2631 Blast hits ... 2246 0.0
> AT3G46750.1 | Symbols: | unknown protein; Has 2631 Blast hits
to 1984 proteins in 271 species: Archae - 6; Bacteria - 163;
Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other
Eukaryotes - 828 (source: NCBI BLink). | chr3:17219741-17221638
FORWARD LENGTH=1547
Length=1547
Score = 2246 bits (1216), Expect = 0.0
Identities = 1438/1542 (93%), Gaps = 27/1542 (2%)
Strand=Plus/Plus
Query 1 TTGTCTTCTCTTTATGCTTCTCCAATAAGTGACCATGACTATTTTAAGCAtttttttttt 60
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 11 TTGTCTTCCCTTCATGCTTCTCCAATAAGAGACCATGACTATTTTAAGCATTTTTTTTTC 70
Query 61 ttATGGTTTGTCCAAGAACCTCGGAGAAACAAGATTCGTGGACATGCATACCTTTTCTTG 120
|||||||||||||||||||||||||||||||||| | |||||||| | ||||||||
Sbjct 71 TTATGGTTTGTCCAAGAACCTCGGAGAAACAAGA--C---GACATGCACAGTTTTTCTTG 125
Query 121 TATTATATGTATCTTATGTTGTTCTCTGAGGAACAGAGTTCCCAAACGGAAGATCAACAA 180
| |||||| ||||||||||||||||| ||||| ||||||||| |||| ||| ||| ||||
Sbjct 126 TCTTATATCTATCTTATGTTGTTCTCAGAGGATCAGAGTTCCTAAACAGAACATCTACAA 185
Query 181 GAATTTTGTGTTTCTCAAATGTCGCGTCAACTTGACCCCGTCGCTGAGCTCGAAAGCTTA 240
||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 186 GAACTTTGTGTTTCTGAAATGTCGCGTCAACTAGACCCCGTCGCTGAGCTCGAAAGCTTA 245
Query 241 AAAACACATGTTGATCATTCTGGAAATCCTTGCTTCTCAACACTTAGCCAGCGTCACCAA 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 246 AAAACACATGTTGATCATTCTGGAAATCCTAGCTTCTCAACACTTAGCCAGCGTCACCAA 305
Query 301 TCTGGTGAAGCTTCAAAAAGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAA 360
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTGGTGAAGCTTCAAAGCGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAA 365
Query 361 CATTCGCACCATAAGAAATCTTTGTTTTCCAAAATGAAGGATAAGGCGAAAAAACTGCAG 420
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 366 CATTCTCACCATAAGAAATCTTTGTTCTCTAAAATGAAGGATAAGGCGAAAAAACTGCAG 425
Query 421 CACAGTGTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTT 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CACAGTCTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTT 485
Query 481 AGCAGATCCGAAGACCATGAAGTTAGAGAAGGTGGTTATGCGTCATTTTCACCACGTGAC 540
||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 486 TGCAGATCCGAAGATCATGAAGTTAGAGAAGTTGGTTATGCGTCATTGTCACCACGTGAC 545
Query 541 AAGTCGAAAGACCGTAAAATCagagaagaagga-g-g-agaagaagaagaagaTCCTGAA 597
||||| |||||||||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 546 AAGTCAAAAGACCGTAAAGTCAGAGAAGAAGGAGGAGAAGAAGAAGAAGAAGATCCTGAA 605
Query 598 TATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACCGCG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 606 TATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACAGCA 665
Query 658 AGGCAGCATCCCCGGGAAAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTACTCCCA 717
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 666 AGGCAGCATCCCCGAGAGAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTTCTCCCA 725
Query 718 GCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTACTGGTTCCAACACAGAACATCAT 777
||||||||||||||||||||||||||||||||||||| ||||||||| |||| | | |||
Sbjct 726 GCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTAATGGTTCCAAAACAG-A-A-CAT 782
Query 778 CCTGTAATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCT 837
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CCTGTGATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCT 842
Query 838 GACACAACAACAATAGTAAC----T-G----AGAAGACAAGGAAAGAGTGCACAAGCCAG 888
|||||||||||||||||||| | | |||||||||||||||||||||| ||||||
Sbjct 843 GACACAACAACAATAGTAACAGAATCGTCTGAGAAGACAAGGAAAGAGTGCACGAGCCAG 902
Query 889 CAGGAACCTATTAGTCCAAGCAAAACGGTAACAGAAACTGTAACAGAGAAGCTAGCACCT 948
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 903 CAGGAACCTATTAGTCCAAGCAAGACAGTAACAGAAACTGTGACAGAGAAGCTAGCACCT 962
Query 949 GCTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCT 1008
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCT 1022
Query 1009 TTCCCAGAACCAACAGAGCCAGAAGAAGAAGTAAATGATGTTGCGGAAATCAACACTGCC 1068
|| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 1023 TTTCCAGAACCAACAGAGCGAGAAGAAGAGGTAAATGATGTTGCAGAAATCAACACTGCC 1082
Query 1069 GGAACTAACCAGCCCACTGGCTTCAATACTAAGGTGTGGGACAAAGGGGTATCAATGAAG 1128
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1083 GGAACTAACCAGCCCACTGGCTTCAATACCAAGGTATGGGACAAAGGCGTATCAATGAAG 1142
Query 1129 GAATACATATCCCAGAAGTTTGAACCTAGCGAAGACGATAGAGAACTATCTCGAGTGATA 1188
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1143 GAATACATATCGCAGAAGTTTGAGCCTAGCGAAGACGATAGAGAACTTTCTCGAGTGATA 1202
Query 1189 TCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACA 1262
Query 1249 ACCATTGTACCTGCTCCAAATTCAGCAGACAACAAAGCTCCCCTTTTAGCCAACACAAAT 1308
| ||| | ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1263 AACATGGCACCTGCTTCAAATTCAGCAGACAACAAAGCTCCTCTTGTAGCCAACACAAAT 1322
Query 1309 GAAATTGTTGAAGAAGAAAATCATGGCAAGATACTACAACCAAACTAAAGAACAGAGAGT 1368
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1323 GAAATTGTTGAAGCAGAAAATCATGGAAAGATACTTCAACCAAACTAAAGAACAGAGAGT 1382
Query 1369 GTTTCT-ATTGTTTATAAAAGCCTCTATGTAAGAAAGAGGCTTTCTATTCCAATTCACTT 1427
|||| | |||||||| ||| ||||||||||||||||||||||||||||| |||| | |||
Sbjct 1383 GTTTTTCATTGTTTACAAA-GCCTCTATGTAAGAAAGAGGCTTTCTATTTCAATCCTCTT 1441
Query 1428 TTTTCCCCTATTAGTTATGTTATCATACCAAAACCTAGATACATTTTTTCTGAACTCTGA 1487
||| ||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||
Sbjct 1442 TTTCCCCCTATTAGTTATGTTATCATACCAAAACCAAGATTCATTTTGTCTGAAGTCTG- 1500
Query 1488 AGTCTGT-TGTATACATAAGAGATTCTAATACATCttttttt 1528
| ||| | |||||||||| ||||||||||||||| ||||
Sbjct 1501 --T-TGTATACATACATAAGAAATTCTAATACATCTTCTTTT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5