BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485045
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46760.1 | Symbols: | Protein kinase superfamily protein | ... 1668 0.0
> AT3G46760.1 | Symbols: | Protein kinase superfamily protein
| chr3:17222027-17223040 FORWARD LENGTH=1014
Length=1014
Score = 1668 bits (903), Expect = 0.0
Identities = 977/1014 (96%), Gaps = 0/1014 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGCAGGTATATTTCTGAGAATGGGGGCAGCTTTAAGATCAATGTATGTGAACAGC 60
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGTTTGCAGGTATATTTCTAAGAATGGGAGCAGCATTAAGATCAATGTATGTGAACAGC 60
Query 61 AAGTATGAAGAAGTCCGAGAAGAATGGGAGGAAGATTACAGTCCTCAGAGGTTTTCTTAC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTATGAAGAAGTACGAGAAGAATGGGAGGAAGATTACAGTCCTCAGAGGTTTTCTTAC 120
Query 121 AAAGCTCTTTACAAAGCCACCAAAGGGTTCAAAGAGAGCGAGTTATTCGGTACAGAGGCT 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCTCTCTACAAAGCAACCAAAGGGTTCAAAGAGAGCGAGTTATTCGGTACAGAGGCT 180
Query 181 AATGGGACAGTTTACAAAGGAAAGCTCTCTTCTAATGCACAGATTGCTGTAAAGAGAGTT 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACGGGACAGTCTACAAAGGAAAGCTCTCTTCTAATGCACAGATTGCTGTAAAGAGAGTT 240
Query 241 TCTTTAGATGCAGAACAAGATACCAAACACCTTGTTTCTCAGATTGTTGGTATTGGGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTTTAGATGCAGAACAAGATACCAAACACCTTGTTTCTCAGATTGTTGGTATTGGGAAG 300
Query 301 TTAAAGCACAAGAATCTTGTGCAGCTCTTAGGATACTGCAGAAGAAAAGGTGAATTACTC 360
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAAGGCACAAGAACCTTGTGCAGCTCTTAGGATACTGCAGAAGAAAAGGTGAATTACTC 360
Query 361 TTGGTCTATGATTATATGCCTTATGGAAATCTTGACGATTTCTTGTTTAATGAAGAAAGG 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 361 TTGGTCTATGATTATATGCCTTATGGAAATCTTGATGATTTCTTGTTTAATGAGGAAAGG 420
Query 421 CCTAACCTTAGTTGGTCTCAAAGGTTTCACATTATCAAAGGAGTGGCTTCAGCTCTTCTA 480
||||| || |||||||| ||||||||||| || ||||||||||| ||||||||||||||
Sbjct 421 CCTAATCTAAGTTGGTCACAAAGGTTTCATATAATCAAAGGAGTTGCTTCAGCTCTTCTT 480
Query 481 TATTTGCACGAACAGATCGTTCTCCACCGAGATGTAAAAGCCGCAAATGTACTCTTGGAT 540
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TATTTGCATGAACAGATCGTTCTTCACCGAGATGTAAAAGCCGCAAATGTACTCTTGGAT 540
Query 541 GAGGATTTAAACGGGCGGCTAGATTTCGGTCTAGCTAGATTTGGTACAAACAGGAATCCA 600
||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 541 GAGGATTTAAACGGGCGACTAGATTACGGTCTAGCAAGATTTGGTACAAACAGGAACCCA 600
Query 601 ATGCTTGGAAGCGTAGGGTATGTGGCTCCAGAGCTTATAATAACAGGAATGCCGACAACC 660
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 ATGCTAGGAAGCGTAGGTTATGTGGCTCCAGAGCTAATAATAACAGGAATGCCGACAACC 660
Query 661 AAAGCCGATGTTTATTCATTCGGGGCATTACTACTTGAGTTTGCTTGTGGAAGAATGTTC 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAGCCGATGTTTATTCATTCGGAGCATTACTACTTGAGTTTGCTTGTGGAAGAATGTTC 720
Query 721 ATTGAGTATCCCGGGAAGCCTGAAGAGTTTAACCTGATCAGCTGGGTGTGTCAATGCTGG 780
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 721 ATTGAGTATCCAGGGAAGCCTGAAGAGTTTAACTTAATCAGCTGGGTGTGTCAATGCTGG 780
Query 781 AAAAGAGGGAACTTAGTTGGCGCCCGAGACGCTAGATTGGAAGGAGACTACGTCTGCAAG 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAAGAGGGAACTTGGTTGGCGCCCGAGACGCTAGATTGGAAGGAGACTACGTCTGCAAG 840
Query 841 GAGATAGAGATGGTACTAAAGCTTGGACTACTATGTGCACAGTACAATCCAGAGGACAGG 900
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 841 GAGATAGAGATGGTACTAAAGCTTGGTCTACTATGTGCACAGTACAATCCAGAGGATAGG 900
Query 901 CCTAGTATGTCCCAAGTGGTAAACTATCTTGAAGGAAATGATGTTTTGCCTGAGATGCCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCTAGTATGTCCCAAGTGGTAAACTATCTTGAAGGAAATGATGTTTTGCCTGAGATGCCT 960
Query 961 CCAGACACTCCTGGGATCAGTATTCCAACACCGTACAACGAAGTTCTTGCGTAG 1014
|||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 961 CCAGACACTCCTGGGATCAGTATTCCAACACCGTACCATGAAGTTCTTGCGTAG 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5