BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485055
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46830.1 | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C, ... 1661 0.0
AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase... 758 0.0
AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding p... 289 5e-77
AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosp... 183 2e-45
> AT3G46830.1 | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C,
RABA2c | RAB GTPase homolog A2C | chr3:17246344-17248713 REVERSE
LENGTH=1238
Length=1238
Score = 1661 bits (899), Expect = 0.0
Identities = 1131/1233 (92%), Gaps = 56/1233 (5%)
Strand=Plus/Plus
Query 1 ACCGTATATTCACTTTATTGCTCCTCTCCTCTTTCTCTCTCGAAGAAGAAGACGAAGCCC 60
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 1 ACCGTATATTCACTTTATTGCTCCTCTCCTC-TT-TCTCACGAAGAAGAAGACGAAGCCC 58
Query 61 AACAAATTAAACAAG---AA----A-TTT--TCC----ATT-T---TGAGAACAAACATT 102
| ||||||||||||| || | ||| ||| ||| | ||||||||||||||
Sbjct 59 ATCAAATTAAACAAGAAAAATTCCATTTTCCTCCATTGATTGTGAGTGAGAACAAACATT 118
Query 103 TAAAGCCTCTCTTAATCAAAGTTTCGTCCTTTATAGATCT-GAAAAACTCGAtttttttt 161
||||| || ||||| |||||||||| | |||||||||||| ||||| |||| | ||||
Sbjct 119 TAAAG-CT-TCTTACTCAAAGTTTCTTTCTTTATAGATCTCAAAAAATTCGA--TATTTT 174
Query 162 tCTCGATTCATCCGCCATTAAGGTACACGAATCGTTATTGCGAGATCGGAGAGTGAAGGA 221
|||||||||||||||||||||||| | |||||||||||||| |||| ||||||
Sbjct 175 TCTCGATTCATCCGCCATTAAGGT-------T--TTATTGCGAGATCGAAGAGAGAAGGA 225
Query 222 GAAAAATGACGCATAGAGTAGATCAAGAATATGATTATTTGTTTAAGATTGTGTTGATTG 281
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 226 G-AAAATGACGCATAGAGTAGATCAGGAATATGATTATTTGTTTAAGATTGTGTTGATTG 284
Query 282 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 344
Query 342 TGGAGTCTAAATCCACTATTGGTGTTGAATTCGCTACCAGAACTACTCAGGTTGAAGGAA 401
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 345 TGGAATCTAAATCCACTATTGGTGTTGAATTCGCCACCAGAACTACTCAGGTTGAAGGAA 404
Query 402 AGACAATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGCGGTACAGGGCAATCACCA 461
|||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 405 AGACCATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGAGGTACAGGGCGATCACAA 464
Query 462 GTGCTTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTATGACATTACCAAGAGACAGA 521
| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 465 GCGCGTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTACGACATTACTAAGAGACAGA 524
Query 522 CTTTTGACAATGTTTTAAGGTGGCTGCGTGAACTGAGAGACCATGCAGATTCCAACATTG 581
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 525 CCTTTGACAATGTTTTAAGGTGGCTGCGCGAACTGAGAGACCATGCAGATTCCAACATTG 584
Query 582 TGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAAG 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAAG 644
Query 642 ATGGTCAGAGTTTGGCTGAGAAGGAAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGAAG 701
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 645 ATGGTCAAAGTTTGGCTGAGAAGGAAGGTCTCTCTTTCCTGGAGACATCTGCTCTTGAAG 704
Query 702 CAACAAACGTTGAGAAAGCGTTTCAGACCATCTTAGGAGAGATCTACCATATCATAAGCA 761
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 705 CAACAAACGTCGAGAAAGCGTTTCAGACCATCTTAGGTGAGATCTACCATATCATAAGCA 764
Query 762 AAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCCGCAATTCCTGGGCAAGGAA 821
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 765 AAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCTGCAATCCCTGGGCAAGGAA 824
Query 822 CTACGATTAACGTTGATGACACATCTGGAGGCGCGAAAAGGGCATGTTGCTCTTCTTAAA 881
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 825 CTACGATTAACGTCGATGACACATCTGGAGGCGCGAAACGAGCATGTTGCTCTTCTTAAA 884
Query 882 CTAAAGGTAAACTGTTTACTTCGTTTGTTCCTTCTTCAAAGATTCAAACTTTTGTTTTCA 941
|||||||||||||||||| |||| ||| ||||| |||| |||||||||||||||||||||
Sbjct 885 CTAAAGGTAAACTGTTTATTTCGGTTGCTCCTTGTTCAGAGATTCAAACTTTTGTTTTCA 944
Query 942 CTGGCTTCTCTTCTTTTCAAGTTTTGGCTGATGAAACGTAACTATGCAAGACTATGTAGA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CTGGCTTCTCTTCTTTTCAAGTTTTGGCTGATGAAACGTAACTATGCAAGACTATGTAGA 1004
Query 1002 ATACTCTGTTTTTATGCTCTTCGGTT-GGGGTTTGTGTTCAGTTTAAAGCTTGTTAGTAG 1060
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1005 ATACTCTGTTTTTATTCTCTTCGGTTTGGGGTTTGTGTTCAGTTTAAAGCTTGTTAGTAG 1064
Query 1061 TGTACTTAGAATCTTCTGGTGCTTGCTT--TT-----------------GGCGTGTTTCT 1101
| |||||||||||||||||||||||||| || || ||||||||
Sbjct 1065 TATACTTAGAATCTTCTGGTGCTTGCTTGCTTTCCCTTCTTCTTCCCTTGGTGTGTTTCT 1124
Query 1102 CTTCATTTCTGGTTTATAAAGTATTTTTAC-ATCTCCGGTTTATTCCGGTTCGTCTTGGC 1160
|| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1125 ATTGATTTCTGGTTTATAAAGTATTTTTTCTATCTCCGGTTTAGTCCGGTTCGTCTTGGC 1184
Query 1161 TTGGTTTAATCAAATCATTGATTCATCTCTTAT 1193
|| ||||||||||||||||||||| ||||||||
Sbjct 1185 TTTGTTTAATCAAATCATTGATTCCTCTCTTAT 1217
> AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase
homolog A2D | chr5:23876586-23878429 FORWARD LENGTH=1020
Length=1020
Score = 758 bits (410), Expect = 0.0
Identities = 581/664 (88%), Gaps = 10/664 (2%)
Strand=Plus/Plus
Query 222 GAAAAATGACGCATAGAGTAGATCAAGAATATGATTATTTGTTTAAGATTGTGTTGATTG 281
|||||||| ||||||| ||||| || || |||||||||||||| ||||| ||||||||||
Sbjct 177 GAAAAATGGCGCATAGGGTAGAACAGGATTATGATTATTTGTTCAAGATCGTGTTGATTG 236
Query 282 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 341
||||||||||||| |||||| | || |||||||| |||||||| |||||||||||||| |
Sbjct 237 GTGATTCTGGTGTCGGGAAAACAAACATCTTGTCTAGATTCACAAGGAATGAGTTTTGTT 296
Query 342 TGGAGTCTAAATCCACTATTGGTGTTGAATTCGCTACCAGAACTAC-TCAGGTTGAAGGA 400
|||| ||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 297 TGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACT-CTTCAGGTTGAAGGA 355
Query 401 AAGACAATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGCGGTACAGGGCAATCACC 460
||||| ||||||||||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 356 AAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGAGCTATCACA 415
Query 461 AGTGCTTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTATGACATTACCAAGAGACAG 520
||||||||||||||||| || || ||||||||||||||||||||||| || || |||||
Sbjct 416 AGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACTAAAAGACAA 475
Query 521 ACTTTTGACAATGTTTTAAGGTGGCTGCGTGAACTGAGAGACCATGCAGATTCCAACATT 580
|| |||||||||||| | |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 476 ACCTTTGACAATGTTCTGAGGTGGCTACGTGAACTAAGAGACCATGCGGATTCCAACATT 535
Query 581 GTGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAA 640
|||||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||
Sbjct 536 GTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGTTGCGGAGGAA 595
Query 641 GATGGTCAGAGTTTGGCTGAGA-AGGAAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGA 699
||||| |||| | | ||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 596 GATGGACAGACTCTAGCTGAGACAG-AAGGTCTCTCTTTCTTGGAGACATCAGCTCTTGA 654
Query 700 AGCAACAAACGTTGAGAAAGCGTTTCAGACCATCTTAGGAGAGATCTACCATATCATAAG 759
||| || || || |||||||| ||||| ||| | |||| |||||| ||||| ||||| ||
Sbjct 655 AGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCACATCATCAG 714
Query 760 CAAAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCCGCAATTCCTGGGCAAGG 819
|||||| || ||||||| ||||||||||| || |||||||| || ||||| ||||||||
Sbjct 715 CAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCCGGGGCAAGG 774
Query 820 AACTACGATTAACGTTGATGACACATCTGGAGGC-G-CGAAAAG-GGCATGTTGCTCTTC 876
||| |||||||||||||| ||||||||||||| | | | ||||| || || |||||| |
Sbjct 775 AACAACGATTAACGTTGAAGACACATCTGGAG-CTGGC-AAAAGAGGT-TGCTGCTCTAC 831
Query 877 TTAA 880
||||
Sbjct 832 TTAA 835
> AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding
protein, blastp match of 80% identity and 5.7e-32 P-value
to SP|Q39434|RAB2_BETVU Ras-related protein Rab2BV. (Sugar beet)
{Beta vulgaris} | chr2:1388194-1388947 FORWARD LENGTH=754
Length=754
Score = 289 bits (156), Expect = 5e-77
Identities = 212/239 (89%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 488 GCACTTCTTGTCTATGACATTACCAAGAGACAGACTTTTGACAATGTTTTAAGGTGGCTG 547
|||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 315 GCACTTCTTGTCTATGACATCACCAAAAGACAGACTTTTGATAATGTCTTAAGGTGGCTA 374
Query 548 CGTGAACTGAGAGACCATGCAGATTCCAACATTGTGATCATGATGGCTGGGAACAAATCC 607
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 375 CGTGAACTAAGAGACCATGCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCT 434
Query 608 GATCTGAACCACTTGAGATCCGTTGCTGAGGAAGATGGTCAGAGTT-TGGCTGAGA-AGG 665
||||| |||||||||||||| || ||||||||||||||||||| || | ||| ||| ||
Sbjct 435 GATCTAAACCACTTGAGATCAGTAGCTGAGGAAGATGGTCAGA-TTCTAGCTAAGACAGA 493
Query 666 AAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGAAGCAACAAACGTTGAGAAAGCGTTT 724
||| |||||||||| |||| ||||| ||||||||||| || || || |||||||| |||
Sbjct 494 AAG-TCTCTCTTTCTTGGAAACATCTGCTCTTGAAGCCACCAATGTCGAGAAAGCATTT 551
> AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:5174523-5175476
REVERSE LENGTH=384
Length=384
Score = 183 bits (99), Expect = 2e-45
Identities = 158/185 (85%), Gaps = 9/185 (5%)
Strand=Plus/Plus
Query 540 GGTGGCTGCGTGAACTGAGAGACCATGCAGATTCCAACATTGTGATCATGATGGCTGGGA 599
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATTGTGATCATGATGGCTGGGA 265
Query 600 ACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAAGATGGTCAGAGTTTGGCTG 659
||||| | ||||| |||||||||||||| || ||||||||||||||||| | | |
Sbjct 266 ACAAAGCTGATCTAAACCACTTGAGATCAGTAGCTGAGGAAGATGGTCATAA---GAC-- 320
Query 660 AGAAGGAAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGAAGCAACAAACGTTGAGAAAG 719
|||| | | |||||||||| |||| ||||| ||||||||||| || || || |||||||
Sbjct 321 AGAA--A-G-TCTCTCTTTCTTGGAAACATCTGCTCTTGAAGCCACCAATGTCGAGAAAG 376
Query 720 CGTTT 724
| |||
Sbjct 377 CATTT 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5