BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485058
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46870.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1652 0.0
> AT3G46870.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:17262983-17264475 FORWARD LENGTH=1095
Length=1095
Score = 1652 bits (894), Expect = 0.0
Identities = 1035/1101 (94%), Gaps = 17/1101 (2%)
Strand=Plus/Plus
Query 1 GACGATTCAAAGTTCACACCTTTGAGAGATGACAGCAATTCGCGTCTTCTCGCGAAAATT 60
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 1 GACGATTCAAAGTTCACGCCTTTGAGAGATGACAGCCATTCGCGTCTGCTCGCGAAAGTT 60
Query 61 ACCAACTTTCGCTTCGATTTTCTTCCAAAATC-TCACTAGAAATCCGACAATTCATCGAA 119
||||||||||||||||||||||||||||| | | || || |||||| ||||||||||||
Sbjct 61 CCCAACTTTCGCTTCGATTTTCTTCCAAAA-CATTACAAGGAATCCGTCAATTCATCGAA 119
Query 120 TTTCATTCTCGAATCTAAAACCCAAAACGTTACTTCACCCAATTCCGCCGAAACCCTTCA 179
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 TTTCATTCTCGAATTTAAAACCCAAAACGCTACTTCACCCAATTCCGCCGAAACCCTTCA 179
Query 180 CTGTCTTTGTATCTCGGTTCCATGACGGGAGACCAAGAGGTCCTCTTTGGAGAGGGAAGA 239
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 180 CTGTCTTTGTTTCTCGGTTCCATGACGGGAGACCAAGAGGTCCTCTCTGGAGAGGTAAGA 239
Query 240 AACTGATCGGAAAAGAAGCCCTTTTCGTGATTCTGGGTCTCAAGAGATTGAAAGACGACG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AACTGATCGGAAAAGAAGCCCTTTTCGTGATTCTGGGTCTCAAGAGATTGAAAGAAGACG 299
Query 300 ACGAGAAGCTGCAGAAGTTTATAAAAACCCATGTTTTCAGATTGTTGAAATTAGACATGT 359
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGAGAAGCTGGACAAGTTTATAAAAACCCATGTTTTCAGATTGTTGAAATTAGACATGT 359
Query 360 TAGCTGTTATCGGCGGGCTTGAACGACAAGAAGAGACTGCCTTAGCCATCAAGATGTTCG 419
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 360 TAGCTGTTATCGGTGAGCTTGAACGACAAGAAGAGACTGCGTTAGCCATCAAGATGTTTG 419
Query 420 AGGTGATCCAGAAGCAAGAATGGTACCAACCTGATGTGTTTATGTACAAGGACCTTATAG 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGTGATCCAGAAACAAGAATGGTACCAACCTGATGTGTTTATGTACAAGGACCTTATAG 479
Query 480 TATCCTTAGCAAAGAGTAAAAGAATGGACGAAGCTATGGCTTTGTGGGAGAAAATGAAGA 539
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 480 TATCCTTAGCAAAGAGTAAAAGAATGGATGAAGCAATGGCGTTGTGGGAGAAAATGAAGA 539
Query 540 AAGAAAACCTCTTTCCTGATTCTCAGACTTATACTGAGGTTATCAGAGGATTTCTTAGAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AAGAAAACCTCTTTCCTGATTCTCAGACTTATACTGAGGTTATCAGAGGATTTCTTCGAG 599
Query 600 ACGGATGTCCCGCTGATGCCATGAATGTGTATGAAGACATGTTGAAATCCCCAGATCCGC 659
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 ACGGATGTCCAGCTGATGCTATGAATGTGTATGAAGACATGTTGAAATCTCCAGATCCGC 659
Query 660 CGGAAGAGTTGCCGTTTAGGGTTTTGTTGAAGGGGCTTCTGCCGCATCCGCTTCTTAGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGGAAGAGTTGCCGTTTAGGGTTTTGTTGAAGGGGCTTCTGCCGCATCCGCTTCTTAGAA 719
Query 720 ACAAAGTGAAGAAGGATTTCGAAGAGTTGTTCCCTGAGAAACATGCTTATGATCCACCAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACAAAGTGAAGAAGGATTTCGAAGAGTTGTTCCCTGAGAAACATGCTTATGATCCACCAG 779
Query 780 AAGAGATATTTGGTAGATGTTGAGGGGAAGTCTATGTTGATCAAGATCCAGA--GTGTGA 837
||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 780 AAGAGATATTTGGTAGATGCTGAGGGGAAGTCTATCTTGATCAAGATCCAGAATGTGTGA 839
Query 838 TATTGAAG---TACCAGTAGATCTGAGAAAGTGGCGAAACAAATTGTTACTTCACTTAGT 894
| ||||| || ||||||||||||| ||||||||||||||| | |||| | |||||
Sbjct 840 TCCTGAAGAAGTATCAGTAGATCTGAGCAAGTGGCGAAACAAAA-G--ACTT-AGTTAGT 895
Query 895 TAGACGAACTCGGATTATGTAGCGACTTCTATTCCTTGTTATGATGCTTCATAATATTAG 954
||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 896 TAGACGAACCCAGATGATGTAGCGACTTCTATTCCTTGTTATGATGCTTCATGATATTAG 955
Query 955 GCAAAGACC-AAACTTT-TGAATCCATCATCTTTATGTAGTGACTTCTATTCCTTGTTCT 1012
||| ||||| ||| ||| ||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 956 GCAGAGACCGAAATTTTGTGAATGCATCATCTTTATGAAGTGACTTCTATTCCTCGTTCT 1015
Query 1013 GATGCTTCATAATATTAGTCAAAGACCGAACTTTGTTAATCCATCATCTTTAT-AGTAAA 1071
||||||||||||||||||||||||||| |||||||| |||| ||||||||| | ||||||
Sbjct 1016 GATGCTTCATAATATTAGTCAAAGACCTAACTTTGTGAATCTATCATCTTT-TGAGTAAA 1074
Query 1072 -A-GATTCTAAGTTGACAACT 1090
| ||||||||||||||||||
Sbjct 1075 GAAGATTCTAAGTTGACAACT 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5