BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485059
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 442 2e-123
> AT3G46880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G59080.1);
Has 51 Blast hits to 51 proteins in 8 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17265293-17266266
FORWARD LENGTH=462
Length=462
Score = 442 bits (239), Expect = 2e-123
Identities = 347/396 (88%), Gaps = 20/396 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGCCTTCTTCCTACACCGCTAAAATCTTT 60
||||||||||||||||||||||||||||||||| ||||||||| ||| ||| || |||||
Sbjct 1 ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGTCTTCTTCCTTCACAGCTCAACTCTTT 60
Query 61 GGCCCCAAGGAACCTTCCTCCTCCGCCAACTTCAACTCCATTTTCCCTCCTCCCTCCAAG 120
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 61 GGCCCCAAGGAACCTTCCTCCTCTGCCAACTTCAACTCCATTTTCCCTCCT---TCC--- 114
Query 121 AGTATTCAGGGAACATCAAGAAACATCCTAAGTTCCAAATATGGCTCCCTAGACCAACGT 180
| |||||||| |||||||||||||||| |||||| |||| |||||||| ||||||
Sbjct 115 ---A---AGGGAACAGCAAGAAACATCCTAAGCTCCAAACATGGGTCCCTAGAACAACGT 168
Query 181 AAAGAATCTGCAACCTGCAATCTAAGTTCATCACTTTATTACGGTGGTCAAGATGTTTAC 240
|||||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 169 AAAGAAGCTGGAACCTGCAATCTAAGCTCATCTCTTTACTACGGTGGTCAAGATGTTTAC 228
Query 241 TCTCAATCCACTCACAACCATACTCACACTACAGTGAAAGAGACAAAATC-TCTGACTTT 299
||||| |||| |||||||||||| || |||| |||||||||||||| | |||||||
Sbjct 229 TCTCACCCCACACACAACCATACTTACCCTAC----AAAGAGACAAAATCTTTTGACTTT 284
Query 300 GCAAAACGTTGTATCCCA-TCAGATTAACAAGGATCAGAACAGAGATAACAATGATGCAA 358
|||||||||| || || ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 285 ACAAAACGTTGAAT--CATTCAGATTAACAAGGATCAGAACAGAGATAACAACGATGCCA 342
Query 359 ACTCGTCGGACGCCTCAAGAGGAAACTGGTGGCAAG 394
| ||||| |||||||| |||||||||||||||||||
Sbjct 343 ATTCGTCTGACGCCTCTAGAGGAAACTGGTGGCAAG 378
Score = 122 bits (66), Expect = 2e-27
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 424 GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAACA-CAAGTTGAA 482
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 379 GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAATATCAAGTTGAA 438
Query 483 ACAGAACAATATATGA 498
|||||||||||| |||
Sbjct 439 ACAGAACAATATTTGA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5