BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485060 Length=669 Score E Sequences producing significant alignments: (Bits) Value AT3G46890.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 926 0.0 > AT3G46890.1 | Symbols: | BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17266341-17267128 REVERSE LENGTH=788 Length=788 Score = 926 bits (501), Expect = 0.0 Identities = 599/646 (93%), Gaps = 8/646 (1%) Strand=Plus/Plus Query 1 ATGGCAATCTCCAATGGCGCCGTGGAATTTCTCCGGCGACGGCTCCTCCCAACAACGTTA 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct 99 ATGGCAATCTCCAATGGCGCCGTGGAATTTCTCCGGCGACGACTCCTCCCAACTACACTA 158 Query 61 ATCCACGTCACGGCTCTAGATGGGATCGTGAATGTTAATTCACTCTTCTCGCTTGCTCTT 120 ||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||| Sbjct 159 ATCCACGTCACGGCTATAGACGGCATCGTGAACGTTAATTCACTCTTCTCGCTTGCTCTT 218 Query 121 TTCCTCGGTCTCACCACAAGTGGAAACATCACTTTCCCGGTTTCCTCATCCGCCGCCGAG 180 |||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 219 TTCCTCGGCCTAACCACAAGTGGAAACATCACTTTCCCGGTTTCCTCATCAGCCTCCGAG 278 Query 181 AACCACCATCTCCACCGATGTATCGCCGCAAAAGGTCCCGCATTAGCGGAGAGGCTTGTC 240 ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| || Sbjct 279 AACCACCATCTCCGCCGATGTATCTCTGCAAAAGGTCCCGCATTAGCGGAGAGGCTAGTA 338 Query 241 TCAAGCCATGTTTACTCCTTCAGCTTATTCCTCTTCTCCAGCCTCATCGCTATGTCTCTC 300 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 339 TCAAGCCATGTTTACTCCTTCAGTTTATTCCTCTTCTCCAGTCTCATCGCTATGTCTCTC 398 Query 301 AAGCAAGCAATCAGG---ACAACAACAACAACAAACGGGAAC-GTTGTGGTGGAGGAGGC 356 ||||||||||| ||| |||||||||||||||||||||||| ||| | | ||||||||| Sbjct 399 AAGCAAGCAATTAGGACAACAACAACAACAACAAACGGGAACTGTT-TAGAGGAGGAGGC 457 Query 357 GCGTGTGTTGAAAGCGGGAGAGGGACGCGTGAACTTGGCAGCTTTGAGGGTTGGGATCGT 416 |||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| || Sbjct 458 GCGTGTGTTGAACGCGGGAGAGGGGCGTGTGAACTTGGCAGCTTTAAGGGTTGGGATTGT 517 Query 417 GGCCTCGTGTGTTGCGTCGGTTTTGGGATGTGGGTTCTTGACAATGGCGTTAGTGGATCT 476 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 518 TGCTTCGTGTGTTGCGTCGGTTTTGGGATGTGGGTTCTTGACAATGGCGTTAGTGGATCT 577 Query 477 TGTTCAGATTAAGCTTGGTCCTTTGGAATGTAAGAGAAGCTTTCATGCACTTGCGGCTAT 536 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 578 TGTTCAGATTAAACTTGGACCTTTGGAATGTAAGAGAAGCTTTCATGCACTTGCAGCTAT 637 Query 537 TATTCCTCTTGTTGTGCTTGTTCCTTCTGCACTTGTTATCTATGTGTTCCTTGTGCTTTA 596 | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || Sbjct 638 TGTTCCTCTTGTTGTACTTGTTCCTTCTGCACTTATTATCTATGTGTTCCTTGTGCTCTA 697 Query 597 CGCATTCATTTATTGACACCTTTT--GGGTTTCTACAATCTCTTGT 640 |||||| || |||| || |||||| |||||||||||||||||||| Sbjct 698 CGCATTTATCTATTAAC-CCTTTTTTGGGTTTCTACAATCTCTTGT 742 Score = 58.4 bits (31), Expect = 9e-08 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 639 GTTTCAGATTCGATTAGTTCTGTAGCCAGAG 669 ||||||||||||||||||||||||||||||| Sbjct 757 GTTTCAGATTCGATTAGTTCTGTAGCCAGAG 787 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32350790668 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5