BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485060
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46890.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 926 0.0
> AT3G46890.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1);
Has 124 Blast hits to 124 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17266341-17267128
REVERSE LENGTH=788
Length=788
Score = 926 bits (501), Expect = 0.0
Identities = 599/646 (93%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATCTCCAATGGCGCCGTGGAATTTCTCCGGCGACGGCTCCTCCCAACAACGTTA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 99 ATGGCAATCTCCAATGGCGCCGTGGAATTTCTCCGGCGACGACTCCTCCCAACTACACTA 158
Query 61 ATCCACGTCACGGCTCTAGATGGGATCGTGAATGTTAATTCACTCTTCTCGCTTGCTCTT 120
||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||
Sbjct 159 ATCCACGTCACGGCTATAGACGGCATCGTGAACGTTAATTCACTCTTCTCGCTTGCTCTT 218
Query 121 TTCCTCGGTCTCACCACAAGTGGAAACATCACTTTCCCGGTTTCCTCATCCGCCGCCGAG 180
|||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 219 TTCCTCGGCCTAACCACAAGTGGAAACATCACTTTCCCGGTTTCCTCATCAGCCTCCGAG 278
Query 181 AACCACCATCTCCACCGATGTATCGCCGCAAAAGGTCCCGCATTAGCGGAGAGGCTTGTC 240
||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 279 AACCACCATCTCCGCCGATGTATCTCTGCAAAAGGTCCCGCATTAGCGGAGAGGCTAGTA 338
Query 241 TCAAGCCATGTTTACTCCTTCAGCTTATTCCTCTTCTCCAGCCTCATCGCTATGTCTCTC 300
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 339 TCAAGCCATGTTTACTCCTTCAGTTTATTCCTCTTCTCCAGTCTCATCGCTATGTCTCTC 398
Query 301 AAGCAAGCAATCAGG---ACAACAACAACAACAAACGGGAAC-GTTGTGGTGGAGGAGGC 356
||||||||||| ||| |||||||||||||||||||||||| ||| | | |||||||||
Sbjct 399 AAGCAAGCAATTAGGACAACAACAACAACAACAAACGGGAACTGTT-TAGAGGAGGAGGC 457
Query 357 GCGTGTGTTGAAAGCGGGAGAGGGACGCGTGAACTTGGCAGCTTTGAGGGTTGGGATCGT 416
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 458 GCGTGTGTTGAACGCGGGAGAGGGGCGTGTGAACTTGGCAGCTTTAAGGGTTGGGATTGT 517
Query 417 GGCCTCGTGTGTTGCGTCGGTTTTGGGATGTGGGTTCTTGACAATGGCGTTAGTGGATCT 476
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TGCTTCGTGTGTTGCGTCGGTTTTGGGATGTGGGTTCTTGACAATGGCGTTAGTGGATCT 577
Query 477 TGTTCAGATTAAGCTTGGTCCTTTGGAATGTAAGAGAAGCTTTCATGCACTTGCGGCTAT 536
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 578 TGTTCAGATTAAACTTGGACCTTTGGAATGTAAGAGAAGCTTTCATGCACTTGCAGCTAT 637
Query 537 TATTCCTCTTGTTGTGCTTGTTCCTTCTGCACTTGTTATCTATGTGTTCCTTGTGCTTTA 596
| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 638 TGTTCCTCTTGTTGTACTTGTTCCTTCTGCACTTATTATCTATGTGTTCCTTGTGCTCTA 697
Query 597 CGCATTCATTTATTGACACCTTTT--GGGTTTCTACAATCTCTTGT 640
|||||| || |||| || |||||| ||||||||||||||||||||
Sbjct 698 CGCATTTATCTATTAAC-CCTTTTTTGGGTTTCTACAATCTCTTGT 742
Score = 58.4 bits (31), Expect = 9e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 639 GTTTCAGATTCGATTAGTTCTGTAGCCAGAG 669
|||||||||||||||||||||||||||||||
Sbjct 757 GTTTCAGATTCGATTAGTTCTGTAGCCAGAG 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5