BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485066
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerol... 1070 0.0
AT3G55030.1 | Symbols: PGPS2 | phosphatidylglycerolphosphate sy... 472 5e-132
> AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate
synthase 1 | chr2:16407239-16409123 FORWARD LENGTH=1209
Length=1209
Score = 1070 bits (579), Expect = 0.0
Identities = 620/640 (97%), Gaps = 2/640 (0%)
Strand=Plus/Plus
Query 583 CTACATTGATCTTACTGTGTACAAAACCTATCGACA-TTGCTGAATTAGGACCAGTTCCA 641
|||||||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 571 CTACATTGATTTTACTGTGTACAAAACCTATCCA-AGTTGCTGAATTAGGACCACTTCCA 629
Query 642 TGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCAGCAGTA 701
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 630 TGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTA 689
Query 702 AGAGAATGGGCTGCATCTCAAAATGGGAAGCTGTTAGAGGCAGTTGCTGTAAATAACTTG 761
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 690 AGAGAATGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTG 749
Query 762 GGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGGGAT 821
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 750 GGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGAT 809
Query 822 AGCAATGTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AGCAATGTTGGATGGCTCGTAGCTTCAGGTGCTGGCTTGCTTTATGTATCAGCAGGACTA 869
Query 882 TCAGTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAGTAT 941
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TCTGTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACTAATGAAGTAGTAT 929
Query 942 TAGTAGTAGTAATTCATCTATTGGTTTTGTTTTGCTTTGACCTGCATTTGGATATATGTA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 930 TAGTAGTAGTAATTCATCTATTGGTTTTGTTTTGCTTTGACCTGCATTTGGATTTATGTA 989
Query 1002 TTGATGGAAAGGGTCTCAGTCATCGCCTGTACAAGAGCACAAAACTTGAATGCTACAACA 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 990 TTGATGGAAAGGGTCTCAGTCATCGCCTGTACAAGAGCACAAAACTTGAATGCTGCAACA 1049
Query 1062 CTTAAGTAGTTTGAGAATATGTAGATGATTTTGCTTTGCACTTTTCCAACACAATATAGA 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TTTAAGTAGTTTGAGAATATGTAGATGATTTTGCTTTGCACTTTTCCAACACAATATAGA 1109
Query 1122 GTGTGCAAAATAGTCTTGATCGAGATTAAAGCCTAATAATGAGTGTATTCTATAAACGCT 1181
|||||||| ||||||||| | ||||||||||||| |||||||||||||| |||||||| |
Sbjct 1110 GTGTGCAACATAGTCTTGGTTGAGATTAAAGCCTTATAATGAGTGTATTGTATAAACGAT 1169
Query 1182 GAATACGTATTTCCAACTTATGGAACAAACATTCTTTATT 1221
||||||||||||||||| ||||||||||||||||||||||
Sbjct 1170 GAATACGTATTTCCAACATATGGAACAAACATTCTTTATT 1209
Score = 835 bits (452), Expect = 0.0
Identities = 524/556 (94%), Gaps = 15/556 (3%)
Strand=Plus/Plus
Query 1 AAATCGAAGCGATCCAAAATAGT-AGCTCGCCCATGCTCAGATCCGGTCTCGCTTCGTTA 59
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 3 AAATCGAAGCGATCCAAATTAGTAAGCTCGCCCATGCTCAGATCCGGTCTGGCTTCGTTA 62
Query 60 ATCGTCGATGTCAATTTGCGGCGCACGTTACGTCCATCCCCAACTTTTTCTTTTCCGGCG 119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 63 ATCGTCGATGTCAATTTGCGGCGCACGTTACGTCCATCCCCAACCTTTTCTTTTCCGGCG 122
Query 120 CATCTTAGCCGCTGCATTATCACTTCCCGTTACTCCTCCCGTACATCTCTAAGGTTTCCG 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CATCTTAGCCGTTGCATTATCACTTCCCGTTACTCCTCCCGTACATCTCTAAGGTTTCCG 182
Query 180 --------AT-TCGCCA-C--CACCG-CATTTCCTGCTTTTCTTCATCCTCTTCGTCGGA 226
|| |||||| | ||||| | | |||| ||||||||||||||||||||||||
Sbjct 183 ATTCAAATATCTCGCCACCAACACCGTC-TATCCTACTTTTCTTCATCCTCTTCGTCGGA 241
Query 227 GCAAAGCAGACCAACTTCCTCTTCCCGAAACAGTTTCAGTGGTCACGGTCAGCTTGATGG 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 242 GCAAAGCAGACCAACTTCCTCTTCCCGAAACAGTTTCAGTGGTCACGGTCAGCTTGATAG 301
Query 287 TGATGGCAATTCTTCACCGCCTCCGTCGCAATCATCTTCCAAAGTTCTTACATTACCCAC 346
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 302 TGATGATAATTCTTCACCGCCTCCGTCGCAATCATCTTCCAAAGTTCTTACATTGCCTAC 361
Query 347 CGTATTAACACTTGGCCGTGTAGCAGCCGTCCCACTTCTCGTCGCAACCTTTTATGTTGA 406
||||||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 362 CGTATTAACACTTGGTCGTGTCGCCGCCGTCCCGCTTCTCGTCGCAACCTTTTACGTTGA 421
Query 407 TAGTTGGTGGGGAACAACTGCTACAACAAGCATTTTCATTGCAGCAGCCATTACAGACTG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TAGTTGGTGGGGAACAACTGCTACAACAAGCATTTTCATTGCAGCAGCCATTACAGACTG 481
Query 467 GCTTGACGGCTATCTTGCCCGCAAGATGAGGTTAGGTTCTGCGTTTGGTGCCTTTTTGGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCTTGACGGCTATCTTGCCCGCAAGATGAGGTTAGGTTCTGCGTTTGGTGCCTTTTTGGA 541
Query 527 TCCAGTTGCAGATAAG 542
||||||||| ||||||
Sbjct 542 TCCAGTTGCTGATAAG 557
> AT3G55030.1 | Symbols: PGPS2 | phosphatidylglycerolphosphate
synthase 2 | chr3:20396760-20398653 FORWARD LENGTH=1231
Length=1231
Score = 472 bits (255), Expect = 5e-132
Identities = 499/612 (82%), Gaps = 35/612 (6%)
Strand=Plus/Plus
Query 321 TCTTCCAAAGTTCTTACATTACCCACCGTATTAACACTTGGCCGTGTAGCAGCCG-TCCC 379
||||| ||||| ||||||| || ||||||||||| |||||||||||||| |||| |||
Sbjct 209 TCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCTGCCGTTCCG 268
Query 380 ACTTCTCGTCGCAACCTTTTATGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCAT 439
| |||||||||| |||||||| |||||| | |||||||||| ||||||||| ||||| ||
Sbjct 269 A-TTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACGACAAGTAT 327
Query 440 TTTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTT 499
|||||||||||||||||||||||| |||||||| || ||| |||| || |||||||| ||
Sbjct 328 TTTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATT 387
Query 500 AGGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCAGATAAGGTACTAAGCTTCATTTA 559
||||||| |||||||| ||||||||||||| || | | | | |||| |
Sbjct 388 GGGTTCTGAATTTGGTGCATTTTTGGATCCAG-TG--G--CA-G-A-TAAG---C----- 431
Query 560 TTATAGTGGAAAAAGAGATCTATCTACATTGATCTTACTGTGTACAAAACCTATCGACAT 619
| || ||| || | | |||||||||| || |||| || ||||| || | |
Sbjct 432 -T-TA-TGG-----TAG--C-AGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGC 480
Query 620 TGCTGAATTAGGACCAGTTCCATGGTTATTGACCGTACCTTCTATTGCAATCATTGGTAG 679
| || ||||||||||||||||||||| |||| |||||||| || || |||||||||||
Sbjct 481 CGTTGTCTTAGGACCAGTTCCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAG 540
Query 680 GGAGATTACTATGTCAGCAGTAAGAGAATGGGCTGCATCTCAAAATGGGAAGCTGTT-AG 738
|||||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 541 AGAGATTACTATGTCTGCAGTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCT-TTCAG 599
Query 739 AGGCAGTTGCTGTAAATAACTTGGGCAAGTGGAAAACCGCCACGCAGATGACAGCACTAA 798
|||| ||||||||||||| |||||| ||||||||||| || |||||||||| ||| ||||
Sbjct 600 AGGCTGTTGCTGTAAATAGCTTGGGAAAGTGGAAAACTGCAACGCAGATGATAGCGCTAA 659
Query 799 CCATACTTCTTGCAAGCCGGGATAGCAATGTTG-GATGGCTCGTAGCTTCAGGTGCTGGC 857
||||||||||||||||||||||||||| | ||| || | || || | || ||| |||
Sbjct 660 CCATACTTCTTGCAAGCCGGGATAGCAGTTTTGAGA-GACTATTACCGTCGGGTATTGGG 718
Query 858 TTGCTTTATGTATCAGCAGGACTATC-AGTTTGGTCTTTAGCCGTTTATATGAGGAAGAT 916
||||| |||||||| ||||| || || | | |||||||||| |||||||||||||||||
Sbjct 719 TTGCTCTATGTATCTGCAGGGCTCTCTA-TATGGTCTTTAGTTGTTTATATGAGGAAGAT 777
Query 917 ATGGAAAGTACT 928
||||| ||||||
Sbjct 778 ATGGAGAGTACT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5