BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485067
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39320.1 | Symbols: | Cysteine proteinases superfamily prot... 521 2e-147
> AT2G39320.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:16417477-16418517 REVERSE LENGTH=685
Length=685
Score = 521 bits (282), Expect = 2e-147
Identities = 543/658 (83%), Gaps = 61/658 (9%)
Strand=Plus/Plus
Query 1 GATGAAAAGTGATGGAAATTGCCAATTCCGTGCTTTAGCTGATCAACTTTATCAAACCTC 60
|||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 3 GATGAAAAGTGATGGAAATTGCCAGTTCCGTGCTTTGGCGGATCAACTTTATCAAAATTC 62
Query 61 GGATTGTCATAAACGTGTTAGACAAGAAATCGTAAAACAG-A-A--T-A-TGTCCACTAA 114
|||||||||| ||| ||||||||||||||||||||||||| | | | | ||||||||||
Sbjct 63 GGATTGTCATGAACTTGTTAGACAAGAAATCGTAAAACAGAACATGTCATTGTCCACTAA 122
Query 115 CTCCGAATGGGGCGATGAAGTCACATTGAGAGTCGCTGCTGATGTGTATGGAGTCAAAAT 174
||| |||||||||||||||| || |||||||| ||||||||||||||| ||| |||||
Sbjct 123 TTCCCAATGGGGCGATGAAGTGACTTTGAGAGTGGCTGCTGATGTGTATCAAGTAAAAAT 182
Query 175 AGTACTCATTACATCAATCAAACTTACTCCATTCATGGAGTTTTTGCCCAAGTCTCAAAA 234
| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 183 AATACTCATTACATCAATCAAACTTATTCCATTTATGGAGTTTTTGCCCAAGTCTCAAAA 242
Query 235 AGAACCCGACAGGGTCATTCATTTGAGCTATCTCGCAGGGATCCATTTCAACTCCATC-- 292
||||| |||| ||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 243 GGAACCGGACAAAGTCATTCATATGAGCTATCTAGCTGGGATCCATTTCAACTCCATCTA 302
Query 293 C---ACAAA-AAAG---GAGGTTCAGGTTTATCTTCATCATCTG-GTTCTGC---CTCGA 341
| | ||| |||| ||||||| ||| |||||||||||| | ||||||| || ||
Sbjct 303 CAAAAAAAATAAAGAAAAAGGTTCACGTTCATCTTCATCATC-GAGTTCTGCAGTCTGGA 361
Query 342 TGGAGCTACagaggaagaaggagaa-gaaggagaagaagcagaa-gaaaagggatgaaga 399
|| |||||||||||||||||||||| | ||| |||||| | || || | ||| | |||
Sbjct 362 TGAAGCTACAGAGGAAGAAGGAGAATG-AGGCGAAGAA--A-AAGGAGGA-GGA-GGAGA 415
Query 400 tgagaacgaaagga-a-ggagaaggaggagaggaaaaaagagaaggaggagaagaaaaaa 457
| ||| | ||||| | |||||||||||||| |||||| || |||||||| ||| ||
Sbjct 416 AG-GAAAGGAAGGACATGGAGAAGGAGGAGAAGAAAAAGGACAAGGAGGATAAG----AA 470
Query 458 gaggaggagaagaaaaaggacaaggaggataagaagaa-g-gc-gaaggtgaaaaaggag 514
|| |||| ||| |||| || || || ||| || | || ||| | ||| ||||||
Sbjct 471 GA--AGGATAAG---GAGGATAA-GAAGA-AAG-CCAAGGTGCAGAAAGAGAAGAAGGAG 522
Query 515 aagaatgagaagaagaacagaaaTCACCATTTTCACTTCTCTGATTTCATGTAAGAATGA 574
||||| ||||||||||||||||||||||| ||||| || | ||| | ||||||
Sbjct 523 AAGAAGGAGAAGAAGAACAGAAATCACCACTTTCA-----CT-A-TTC---T--GAATGA 570
Query 575 TTTGTTTT-ACTAAATTAAGAGTAGTCTGCATTTGACAAGTTGTATGTTATTATTGGG 631
|||||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 571 TTTGTTTTGA-TAAATTAAGTGTA-TCTGCATTTGACAAGTTGTATGTTATTATTGGG 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5