BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485072 Length=1474 Score E Sequences producing significant alignments: (Bits) Value AT3G46950.1 | Symbols: | Mitochondrial transcription terminati... 1245 0.0 AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB... 152 9e-36 > AT3G46950.1 | Symbols: | Mitochondrial transcription termination factor family protein | chr3:17289369-17290963 FORWARD LENGTH=1595 Length=1595 Score = 1245 bits (674), Expect = 0.0 Identities = 852/937 (91%), Gaps = 15/937 (2%) Strand=Plus/Plus Query 22 TCTT-CTCATGTTTTCTTTAATAATCCATGGAAGAAGGTCTGTGGAATTGCAGAAATGGC 80 |||| |||||||||||| |||| |||||||||||| |||||||||||| |||||||||| Sbjct 76 TCTTCCTCATGTTTTCTCTAATTCTCCATGGAAGAAAGTCTGTGGAATTACAGAAATGGC 135 Query 81 GTAATTTAAGAGTTTCATTGAGTATTTTGCAAAATGCATTTGCTTTTACCACCAAATCGT 140 |||||||||||||| || |||| ||| |||||||||||||| |||||||||||||||||| Sbjct 136 GTAATTTAAGAGTTACAGTGAGCATTGTGCAAAATGCATTTCCTTTTACCACCAAATCGT 195 Query 141 TCTCTTCTGCAATAGCTAAAGATGT-GAGTCCAAAGGGAACAACTTTCACTGTCACTTAT 199 |||||||| |||||||||||||| | |||||||||||||| |||||||| ||| ||||| Sbjct 196 TCTCTTCTACAATAGCTAAAGAT-TCGAGTCCAAAGGGAAGTACTTTCACAGTCTCTTAT 254 Query 200 CTAGTTGAATCATTGGGTTTAACTAAAAAACTTGCAGAATCAATCTCAAAGAAAGTAAGT 259 || ||||||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct 255 CTCGTTGAATCATTGGGTTTGACTAAAAAACTTGCAGAAACAATCTCAAAGAAAGTCACC 314 Query 260 TTCGAAGACAAGGTAAATCCGGATTCTGTTCTGAATCTTTTTAGAAGTAATGGGTTTAAA 319 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 315 TTCGAAGACAAGGTAAATCCAGATTCTGTTCTGAATCTTCTTAGAAGTAATGGGTTTAAA 374 Query 320 GATTCTCAGATCTCTAGGATCATTAGGGCTTACCCAAGATTGCTTGTAATTGATGCTGAG 379 ||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 375 GATTCTCAGATATCTAGGATCATAAGGGCTTACCCACGATTGCTTGTAACAGATGCTGAG 434 Query 380 AAGTCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 439 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 AAATCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 494 Query 440 ACAGAAATTGTTTCGAATGTTCCTACAATCTTGGGA-AAGAAAGGGGA-GAAATCTATTA 497 | ||| ||||||||||||||||| |||||||||| | |||||||| || ||| ||| ||| Sbjct 495 ATAGAGATTGTTTCGAATGTTCCAACAATCTTGG-ATAAGAAAGGTGAAGAA-TCTGTTA 552 Query 498 GCTTGTACTATGATTTCGTTAAGGACATTATGGAAGATGGTAAAAGTTTAG-GTCATT-C 555 | || ||||||||||||||||||||||||||| |||||||||||||||| | || ||| | Sbjct 553 GTTTATACTATGATTTCGTTAAGGACATTATGCAAGATGGTAAAAGTTT-GTGT-ATTTC 610 Query 556 TTGGCCAGAGGGTAAGAAAGGGAACAAAATCCGAAATATCTCGGTTTTAAGAGAATTGGG 615 ||| |||||||| |||||||| |||| ||| |||||||| |||||||| ||||||||||| Sbjct 611 TTGTCCAGAGGGAAAGAAAGGTAACAGAATTCGAAATATATCGGTTTTGAGAGAATTGGG 670 Query 616 AGTGCCTCAGAAGTTGTTGTTTCCATTGGTCATCTCTA-ATTATCAACCTGTTTGTGGTA 674 ||| |||||||||||||||||| ||||| | || |||| || |||||||||||||||||| Sbjct 671 AGTACCTCAGAAGTTGTTGTTTTCATTGCTTATATCTAGAT-ATCAACCTGTTTGTGGTA 729 Query 675 AAGAAAAATTTGAAGAAACTCTCAAGAAAGTTGTTGATATGGGTTTTGATCCGACCAAAT 734 |||| || |||||||||| | | |||||||||||||||||||||||||||||| | |||| Sbjct 730 AAGAGAAGTTTGAAGAAAGTTTAAAGAAAGTTGTTGATATGGGTTTTGATCCGGCTAAAT 789 Query 735 C-AACGTTTGTGGAAGCTTTGCATGTAGTTTACAAAATGAGCGAGAAAACGATAGAAGAG 793 | || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 790 CCAA-GTTTGTGGAAGCTTTGCATGTAGTTTACGAAATGAGCGAGAAAACGATAGAAGAG 848 Query 794 AAAGTGAATGTTTATAAAAGGTTAGGCTTTAGTGAAGTGGATATATGGGCAATTTTCAAG 853 ||||||||||| ||||| ||||||||||||||||||| || |||||||| ||||||||| Sbjct 849 AAAGTGAATGTGTATAAGAGGTTAGGCTTTAGTGAAGCCGAGATATGGGCGATTTTCAAG 908 Query 854 AAGTGGCCTTTCTTTTTGAAATTCTCGGAGAAGAAGATAATTCTGATGTATGAAACACTG 913 |||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct 909 AAGTGGCCTTACTTTTTAAAATTCTCTGAGAAGAAGATAATTCTGATGTTTGAAACACTG 968 Query 914 AAGAAGTGTGGTTTGGTGGAGGAAGAGGTCATTTCGG 950 ||||||||||||||||| ||||||||| | ||||||| Sbjct 969 AAGAAGTGTGGTTTGGTAGAGGAAGAGATTATTTCGG 1005 Score = 678 bits (367), Expect = 0.0 Identities = 489/544 (90%), Gaps = 23/544 (4%) Strand=Plus/Plus Query 950 GACTCTATTGAAACGTTTC-TAGACTTAGGTTTCAGTAGAGATGAGTTCAAGATGATGGT 1008 ||||||||||||| | ||| ||| |||||| |||||||||||||| |||||||||||||| Sbjct 1056 GACTCTATTGAAATG-TTCTTAGGCTTAGGATTCAGTAGAGATGATTTCAAGATGATGGT 1114 Query 1009 TAAGCGATATCCTCAG-TGCACTGCATATACT-GCAGAGACGGTGAGGAAGAAGTTTGAG 1066 ||||||||||||| | |||||||||||| || || |||||| ||||||||||||||||| Sbjct 1115 TAAGCGATATCCT-TGTTGCACTGCATATTCTGGC-GAGACGCTGAGGAAGAAGTTTGAG 1172 Query 1067 GTTTTGGTGAAGAAAATGAATTGGCCACTAGAAGATGTAGTTTTGATCCCTGCGGTACTT 1126 ||||||||||||| ||||||||||| ||||| | ||| || |||||||| |||||||| Sbjct 1173 GTTTTGGTGAAGATGATGAATTGGCCGCTAGAGGCTGTGGTCATGATCCCTACGGTACTT 1232 Query 1127 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGACTAACGTAATCAAAGCTCTCATGTCG 1186 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1233 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGTCTAACGTGATCAAAGCTCTCATGTCG 1292 Query 1187 AAAGGATTGATTGGTAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1246 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1293 AAAGGATTGATCGGAAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1352 Query 1247 GAGTTCTTGAAAAGGTACGTGATGAAGCACGACAAGCTAGTGCCTAAGTTGATGGCTATC 1306 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1353 GAGTTCTTGAAAAGGTATGTGATGAAGCATGACAAGCTAGTGCCTAAGTTGATGGCTATC 1412 Query 1307 TTCACCACAGCTCGAGTTTCATAGTGAATCTTT---C---TGA---G----GA--A-GAG 1350 |||| || || ||| |||||||||| ||||||| | ||| | || | ||| Sbjct 1413 TTCAACAGAGGTCGTGTTTCATAGTTAATCTTTTAACGCGTGAATAGAACTGAGGAAGAG 1472 Query 1351 GAGTTTTTATTTTCTAGTGTATGTCAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1410 |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1473 GAGTTTTTATTTACTAGTGTCTGTTAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1532 Query 1411 TAACGAAAAATTTAACGACTATATTCTATGGACATGTTTAGTGATTTGAATTTCAAGTTA 1470 |||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| Sbjct 1533 TAACGAAAAATTTAACTACTATATT-TGTGGACATGTTTAGTGATTTGAATTTCAAGTTA 1591 Query 1471 AGTG 1474 |||| Sbjct 1592 AGTG 1595 > AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr3:17290873-17298067 REVERSE LENGTH=4175 Length=4175 Score = 152 bits (82), Expect = 9e-36 Identities = 89/92 (97%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1383 AAACTGAAATCCATTTCTGTAATAGTCGTAACGAAAAATTTAACGACTATATTCTATGGA 1442 |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 4175 AAACTGAAATCCATTTCTGTAATAGTCGTAACGAAAAATTTAACTACTATATT-TGTGGA 4117 Query 1443 CATGTTTAGTGATTTGAATTTCAAGTTAAGTG 1474 |||||||||||||||||||||||||||||||| Sbjct 4116 CATGTTTAGTGATTTGAATTTCAAGTTAAGTG 4085 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72690389160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5