BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485072
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46950.1 | Symbols: | Mitochondrial transcription terminati... 1245 0.0
AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB... 152 9e-36
> AT3G46950.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:17289369-17290963 FORWARD
LENGTH=1595
Length=1595
Score = 1245 bits (674), Expect = 0.0
Identities = 852/937 (91%), Gaps = 15/937 (2%)
Strand=Plus/Plus
Query 22 TCTT-CTCATGTTTTCTTTAATAATCCATGGAAGAAGGTCTGTGGAATTGCAGAAATGGC 80
|||| |||||||||||| |||| |||||||||||| |||||||||||| ||||||||||
Sbjct 76 TCTTCCTCATGTTTTCTCTAATTCTCCATGGAAGAAAGTCTGTGGAATTACAGAAATGGC 135
Query 81 GTAATTTAAGAGTTTCATTGAGTATTTTGCAAAATGCATTTGCTTTTACCACCAAATCGT 140
|||||||||||||| || |||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 136 GTAATTTAAGAGTTACAGTGAGCATTGTGCAAAATGCATTTCCTTTTACCACCAAATCGT 195
Query 141 TCTCTTCTGCAATAGCTAAAGATGT-GAGTCCAAAGGGAACAACTTTCACTGTCACTTAT 199
|||||||| |||||||||||||| | |||||||||||||| |||||||| ||| |||||
Sbjct 196 TCTCTTCTACAATAGCTAAAGAT-TCGAGTCCAAAGGGAAGTACTTTCACAGTCTCTTAT 254
Query 200 CTAGTTGAATCATTGGGTTTAACTAAAAAACTTGCAGAATCAATCTCAAAGAAAGTAAGT 259
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 255 CTCGTTGAATCATTGGGTTTGACTAAAAAACTTGCAGAAACAATCTCAAAGAAAGTCACC 314
Query 260 TTCGAAGACAAGGTAAATCCGGATTCTGTTCTGAATCTTTTTAGAAGTAATGGGTTTAAA 319
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 315 TTCGAAGACAAGGTAAATCCAGATTCTGTTCTGAATCTTCTTAGAAGTAATGGGTTTAAA 374
Query 320 GATTCTCAGATCTCTAGGATCATTAGGGCTTACCCAAGATTGCTTGTAATTGATGCTGAG 379
||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 375 GATTCTCAGATATCTAGGATCATAAGGGCTTACCCACGATTGCTTGTAACAGATGCTGAG 434
Query 380 AAGTCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 439
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AAATCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 494
Query 440 ACAGAAATTGTTTCGAATGTTCCTACAATCTTGGGA-AAGAAAGGGGA-GAAATCTATTA 497
| ||| ||||||||||||||||| |||||||||| | |||||||| || ||| ||| |||
Sbjct 495 ATAGAGATTGTTTCGAATGTTCCAACAATCTTGG-ATAAGAAAGGTGAAGAA-TCTGTTA 552
Query 498 GCTTGTACTATGATTTCGTTAAGGACATTATGGAAGATGGTAAAAGTTTAG-GTCATT-C 555
| || ||||||||||||||||||||||||||| |||||||||||||||| | || ||| |
Sbjct 553 GTTTATACTATGATTTCGTTAAGGACATTATGCAAGATGGTAAAAGTTT-GTGT-ATTTC 610
Query 556 TTGGCCAGAGGGTAAGAAAGGGAACAAAATCCGAAATATCTCGGTTTTAAGAGAATTGGG 615
||| |||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||
Sbjct 611 TTGTCCAGAGGGAAAGAAAGGTAACAGAATTCGAAATATATCGGTTTTGAGAGAATTGGG 670
Query 616 AGTGCCTCAGAAGTTGTTGTTTCCATTGGTCATCTCTA-ATTATCAACCTGTTTGTGGTA 674
||| |||||||||||||||||| ||||| | || |||| || ||||||||||||||||||
Sbjct 671 AGTACCTCAGAAGTTGTTGTTTTCATTGCTTATATCTAGAT-ATCAACCTGTTTGTGGTA 729
Query 675 AAGAAAAATTTGAAGAAACTCTCAAGAAAGTTGTTGATATGGGTTTTGATCCGACCAAAT 734
|||| || |||||||||| | | |||||||||||||||||||||||||||||| | ||||
Sbjct 730 AAGAGAAGTTTGAAGAAAGTTTAAAGAAAGTTGTTGATATGGGTTTTGATCCGGCTAAAT 789
Query 735 C-AACGTTTGTGGAAGCTTTGCATGTAGTTTACAAAATGAGCGAGAAAACGATAGAAGAG 793
| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 790 CCAA-GTTTGTGGAAGCTTTGCATGTAGTTTACGAAATGAGCGAGAAAACGATAGAAGAG 848
Query 794 AAAGTGAATGTTTATAAAAGGTTAGGCTTTAGTGAAGTGGATATATGGGCAATTTTCAAG 853
||||||||||| ||||| ||||||||||||||||||| || |||||||| |||||||||
Sbjct 849 AAAGTGAATGTGTATAAGAGGTTAGGCTTTAGTGAAGCCGAGATATGGGCGATTTTCAAG 908
Query 854 AAGTGGCCTTTCTTTTTGAAATTCTCGGAGAAGAAGATAATTCTGATGTATGAAACACTG 913
|||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 909 AAGTGGCCTTACTTTTTAAAATTCTCTGAGAAGAAGATAATTCTGATGTTTGAAACACTG 968
Query 914 AAGAAGTGTGGTTTGGTGGAGGAAGAGGTCATTTCGG 950
||||||||||||||||| ||||||||| | |||||||
Sbjct 969 AAGAAGTGTGGTTTGGTAGAGGAAGAGATTATTTCGG 1005
Score = 678 bits (367), Expect = 0.0
Identities = 489/544 (90%), Gaps = 23/544 (4%)
Strand=Plus/Plus
Query 950 GACTCTATTGAAACGTTTC-TAGACTTAGGTTTCAGTAGAGATGAGTTCAAGATGATGGT 1008
||||||||||||| | ||| ||| |||||| |||||||||||||| ||||||||||||||
Sbjct 1056 GACTCTATTGAAATG-TTCTTAGGCTTAGGATTCAGTAGAGATGATTTCAAGATGATGGT 1114
Query 1009 TAAGCGATATCCTCAG-TGCACTGCATATACT-GCAGAGACGGTGAGGAAGAAGTTTGAG 1066
||||||||||||| | |||||||||||| || || |||||| |||||||||||||||||
Sbjct 1115 TAAGCGATATCCT-TGTTGCACTGCATATTCTGGC-GAGACGCTGAGGAAGAAGTTTGAG 1172
Query 1067 GTTTTGGTGAAGAAAATGAATTGGCCACTAGAAGATGTAGTTTTGATCCCTGCGGTACTT 1126
||||||||||||| ||||||||||| ||||| | ||| || |||||||| ||||||||
Sbjct 1173 GTTTTGGTGAAGATGATGAATTGGCCGCTAGAGGCTGTGGTCATGATCCCTACGGTACTT 1232
Query 1127 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGACTAACGTAATCAAAGCTCTCATGTCG 1186
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1233 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGTCTAACGTGATCAAAGCTCTCATGTCG 1292
Query 1187 AAAGGATTGATTGGTAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1246
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AAAGGATTGATCGGAAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1352
Query 1247 GAGTTCTTGAAAAGGTACGTGATGAAGCACGACAAGCTAGTGCCTAAGTTGATGGCTATC 1306
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1353 GAGTTCTTGAAAAGGTATGTGATGAAGCATGACAAGCTAGTGCCTAAGTTGATGGCTATC 1412
Query 1307 TTCACCACAGCTCGAGTTTCATAGTGAATCTTT---C---TGA---G----GA--A-GAG 1350
|||| || || ||| |||||||||| ||||||| | ||| | || | |||
Sbjct 1413 TTCAACAGAGGTCGTGTTTCATAGTTAATCTTTTAACGCGTGAATAGAACTGAGGAAGAG 1472
Query 1351 GAGTTTTTATTTTCTAGTGTATGTCAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1410
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1473 GAGTTTTTATTTACTAGTGTCTGTTAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1532
Query 1411 TAACGAAAAATTTAACGACTATATTCTATGGACATGTTTAGTGATTTGAATTTCAAGTTA 1470
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1533 TAACGAAAAATTTAACTACTATATT-TGTGGACATGTTTAGTGATTTGAATTTCAAGTTA 1591
Query 1471 AGTG 1474
||||
Sbjct 1592 AGTG 1595
> AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1
protein | chr3:17290873-17298067 REVERSE LENGTH=4175
Length=4175
Score = 152 bits (82), Expect = 9e-36
Identities = 89/92 (97%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 1383 AAACTGAAATCCATTTCTGTAATAGTCGTAACGAAAAATTTAACGACTATATTCTATGGA 1442
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 4175 AAACTGAAATCCATTTCTGTAATAGTCGTAACGAAAAATTTAACTACTATATT-TGTGGA 4117
Query 1443 CATGTTTAGTGATTTGAATTTCAAGTTAAGTG 1474
||||||||||||||||||||||||||||||||
Sbjct 4116 CATGTTTAGTGATTTGAATTTCAAGTTAAGTG 4085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5