BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485075
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46980.3 | Symbols: PHT4;3 | phosphate transporter 4;3 | chr... 2647 0.0
> AT3G46980.3 | Symbols: PHT4;3 | phosphate transporter 4;3 | chr3:17307055-17309938
REVERSE LENGTH=1883
Length=1883
Score = 2647 bits (1433), Expect = 0.0
Identities = 1734/1875 (92%), Gaps = 38/1875 (2%)
Strand=Plus/Plus
Query 1 ACCGGAATAATCGTAAGCAGCTCCGATTGGTGAAAATGTGTTGCTCTCTCTCTATACAAT 60
|||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 5 ACCGGAGTAATCGTAAGCAGCTTCGACTGGTGAAAATGTGTTACTCTCTCTCTATACAAT 64
Query 61 CTTCAATAGACTTCCGTAATCGAAGCTCCCTAAAAATCCATGGAGATCGAGCAATCTTGG 120
||||||| ||||||| |||||||| | | |||||||||||||||||||||||||| || |
Sbjct 65 CTTCAATTGACTTCCATAATCGAAACGCTCTAAAAATCCATGGAGATCGAGCAAT-TTTG 123
Query 121 A-TTCGAACTTACCTTCACTGAGGTGGATTCCGTCTTTGCCGGAGCGAGATCGCCGGAGA 179
| ||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 124 ACTTCGAACTTACCTACACTCAGGAGGATTCCGTTTTTGCCGGAGCGAGATCGCCGGAGA 183
Query 180 AAGTTGTTACTCTGCT-CCGGGAGAAG-CGTAGGA-TCGTTGAGATTCACCAGAAATACT 236
|||||| | ||||| | ||||||| || |||| | || |||| ||||||| |||| |||
Sbjct 184 AAGTTGGTCCTCTG-TACCGGGAG-AGTCGTA-AACTCATTGAAATTCACCGGAAACACT 240
Query 237 GCCGTCCATTTATGTGGTATTCCGCGTCATCGATTAAGAGTGTCTTGCAGCGATGCTCGC 296
||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCCGTCGATCTATGTGGTATTCCTCGTCATCGATTAAGAGTTTCTTGCAGCGATGCTCGC 300
Query 297 CGTTCGCCGGAAGAGACGGCGGCGGAGATGACGGCGCAACCTAATTTTTCGGAATTTATA 356
||| | |||||||| |||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 301 CGTACACCGGAAGAAACGGCGGCGGAGTTGACGGCGCAACCCAATTTTTCAGAATTTATA 360
Query 357 ACGTCGGAGAGAGTGAAAGTGGTCGCGATGCTTGCGCTTGCTCTGGCGCTGTGCAATGCG 416
|||||||||||||| |||||||| |||||||| ||||||||| ||||||| |||||||||
Sbjct 361 ACGTCGGAGAGAGTCAAAGTGGTTGCGATGCTCGCGCTTGCTTTGGCGCTATGCAATGCG 420
Query 417 GATCGTGTTGTGATGTCCGTCGCGATTGTTCCTCTTTCGCTTTCTCGTGGATGGAGCAAG 476
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATCGTGTTGTGATGTCCGTTGCGATTGTTCCTCTTTCGCTTTCTCGTGGATGGAGCAAA 480
Query 477 TCATTTTCCGGTATCGTTCAGTCATCGTTTCTGTGGGGATACTTAATTTCACCAATAGCT 536
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 481 TCATTTTCCGGTATCGTTCAGTCATCGTTTCTATGGGGATACTTAATTTCTCCAATTGCT 540
Query 537 GGTGGAACTTTGGTGGACCGTTATGGCGGTAAAGTAGTCATGGCGTGGGGTGTGGCTCTG 596
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 541 GGTGGAACTTTGGTGGACCGTTATGGTGGTAAAGTAGTCATGGCGTGGGGTGTGGCTTTG 600
Query 597 TGGTCGTTGGCTACTTTCCTTACCCCTTGGGCTGCTGATAGTTCTTTGTGGGCACTTCTT 656
||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 601 TGGTCGTTGGCAACTTTTCTTACCCCTTGGGCGGCTGATAGTTCTTTGTGGGCTCTTCTT 660
Query 657 GCTGCAAGAGCTATGGTTGGAGTTGCTGAAGGAGTAGCTCTTCCTTGCATGAACAACATG 716
||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 661 GCTGCAAGAGCGATGGTTGGGGTTGCTGAAGGAGTGGCTCTTCCTTGTATGAACAACATG 720
Query 717 GTTGCGAGATGGTTTCCCTCAACAGAACGTTCAAGGGCGGTTGGTATCGCTATGGCGGGG 776
|||||||||||||||||| ||||||||||||| |||||||||||||| || ||||| |||
Sbjct 721 GTTGCGAGATGGTTTCCCCCAACAGAACGTTCTAGGGCGGTTGGTATTGCAATGGCAGGG 780
Query 777 TTTCAGCTTGGGAATGTTGTAGGACTCATGTTGTCTCCTATTCTTATGTCTCAAGGTGGT 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 TTTCAGCTTGGGAATGTTGTAGGACTCATGTTGTCTCCTATTCTTATGTCTCAAGGAGGT 840
Query 837 ATATATGGCCCATTTGTAATATTTGGGCTATCGGGGTTCCTTTGGTTGCTCGTGTGGCTC 896
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 841 ATATATGGCCCATTTGTAATTTTTGGACTATCGGGGTTCCTTTGGTTGCTCGTGTGGCTC 900
Query 897 TCTGCGACATCAAGTGCACCAGATCGACATCCTCAGATTACAAAGTCTGAACTTGAGTAT 956
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGCAACGTCAAGTGCACCAGATCGACATCCTCAGATTACAAAGTCTGAACTTGAGTAT 960
Query 957 ATAAAGCAAAAGCAGCAACCATCTACTGGGGAGAACAAACGAAACACCACAGGTGGAATA 1016
|||||||||||| ||||| ||||||| |||||||||||||| | |||| ||||||||
Sbjct 961 ATAAAGCAAAAGAAGCAAATATCTACTATGGAGAACAAACGAATTAGCACAAGTGGAATA 1020
Query 1017 CCTCCTTTTGGACGCCTTCTCTCCAAGATGCCGACTTGGGCTGTTATAGTTGCAAATTCC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCTCCTTTTGGACGCCTTCTCTCCAAGATGCCGACTTGGGCTGTTATAGTTGCAAATTCC 1080
Query 1077 ATGCATAGCTGGGGTTTCTTTGTGATTCTTTCATGGATGCCCATATACTTCAATTCAGTA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATGCATAGCTGGGGTTTCTTTGTGATTCTTTCATGGATGCCCATATACTTCAATTCAGTA 1140
Query 1137 TATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCT 1200
Query 1197 TTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGTTGATACGGCGTGGTACAAGCATC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGTTGATACGGCGTGGTACAAGCATC 1260
Query 1257 ACCTTAACGCGAAAAATCATGCAGTCCATTGGTTTCATTGGTCCTGGAATTTCTCTCATT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1261 ACCTTAACGCGAAAAATCATGCAGTCCATTGGTTTCATTGGTCCTGGAATTGCTCTCATT 1320
Query 1317 GGTCTAACGACAGCGAAACAACCTTTAGTAGCATCAGCCTGGCTTAGTTTAGCCGTTGGG 1376
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 GGTCTAACGACGGCAAAACAACCTTTAGTGGCATCAGCCTGGCTTAGTTTAGCCGTTGGG 1380
Query 1377 CTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGGAAATTGCTCCAGAGTAT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1381 CTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGGAAATTGCTCCCGAATAT 1440
Query 1437 TCGGGTGTTCTACATGGAATGTGTCTTACTGCTGGGACTTTGGCTGCGATAGTTGGCACA 1496
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1441 TCCGGTGTTCTACATGGAATGTGTCTTACTGCTGGGACATTAGCTGCGATAGTTGGCACA 1500
Query 1497 GTTGGAACTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAAGGATTCATCCTTCTTACA 1556
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1501 GTTGGAGCTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAGGGATTCATCCTTCTTACA 1560
Query 1557 GCAATTTTGTATCTTCTTTCTGCTCTCTTTTACAACATATATGCAACTGGAGAAAGAGTC 1616
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1561 GCAATATTGTATCTCCTTTCTGCTCTCTTTTACAACATATACGCAACTGGAGAAAGAGTA 1620
Query 1617 GATTTTGACACTACAGC---TTGAAGGAGACCACAAAGTCGGTTAATAGGTGGATCAGCT 1673
||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1621 GATTTTGACACAACAGCAGCTTGAAGGTGACCACAAAGTCACTTAATAGGTGGATCAGCT 1680
Query 1674 AGTAGAGAAGTTGCAACTCTAAATAGAATCAGCTTTTGCTCTCCAAGTAAATATCAGAAA 1733
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 1681 AGTAAAGAAGTTGCAACTCTATATAGAATCAGCTTTTGCTCTCCAAGTAAATACCAGGAA 1740
Query 1734 CAAGATATATCTCGACTTTGTACAGAAACTAG--T--CT-C--CT---TG---------- 1773
||||| |||| ||||||||||||||||| | || | || ||
Sbjct 1741 CAAGAC----CTCGGCTTTGTACAGAAACTAGAATTTCTTCGTCTCGATGGTTCTCTCCT 1796
Query 1774 --ATAAATAA-TGAAAAAATGTACCAAGTTTTCTATGTTCAGTGTCATGAAACGCCTTTG 1830
|||||||| |||||||||||| |||||| |||||||||| |||| |||| |||||| |
Sbjct 1797 TGATAAATAAATGAAAAAATGTAGCAAGTTATCTATGTTCAATGTCGTGAATCGCCTTAG 1856
Query 1831 AGAAGATAATGGAAA 1845
||||||||||| |||
Sbjct 1857 AGAAGATAATGAAAA 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93172211520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5