BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485078
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46990.1 | Symbols: | Protein of unknown function (DUF740) ... 2420 0.0
AT5G58930.1 | Symbols: | Protein of unknown function (DUF740) ... 621 7e-177
AT3G47000.1 | Symbols: | Glycosyl hydrolase family protein | c... 165 1e-39
> AT3G46990.1 | Symbols: | Protein of unknown function (DUF740)
| chr3:17311672-17313752 FORWARD LENGTH=2081
Length=2081
Score = 2420 bits (1310), Expect = 0.0
Identities = 1667/1831 (91%), Gaps = 57/1831 (3%)
Strand=Plus/Plus
Query 1 AAAAATATTTAACAAATAGAAAATTGAAAAAATGGGTTTAAGGAAGTGAAATTTTCATAA 60
||||||| | |||||||||||||||||| ||| |||||| ||||||||||| |||||
Sbjct 70 AAAAATACTGAACAAATAGAAAATTGAAGAAA-GGGTTT----AAGTGAAATTTCCATAA 124
Query 61 CTGACCCTACAAACAACACTAACACTCCGATCATC-A-ACACTCTCACActctctctctc 118
||||||||||||||||||| ||||| |||||| | ||||||||||| | | |||||
Sbjct 125 TTGACCCTACAAACAACACTTACACT---ATCATCAAGACACTCTCACA--CACACTCTC 179
Query 119 tctTAAGTCACCGCCGCACGCAAGCAAATC-AACGAACCATTATTCTTCAGCCATGACTA 177
|||||||||||||||||||||||||||||| |||||| | ||||| ||||||||| |||
Sbjct 180 TCTTAAGTCACCGCCGCACGCAAGCAAATCAAACGAA-C--TATTCGTCAGCCATGGCTA 236
Query 178 ACGTCAAACAAACCAATCGCCGTCGTTCTTCCTCCTTATGCCACCGTCACCCTTCCGCTA 237
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 237 ACGTCAAACAAACCAATCGCCGTCGTTCCTCCTCCTCATGCCACCGTCACCCTTCCGCTA 296
Query 238 AACCAACCAGCGGTTTCTGCGCTTCCTGTCTCCGTGAACGTCTCGTCACTATAGAAGCTC 297
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 297 AACCAACCAGCGGTTTCTGCGCTTCCTGTCTTCGTGAACGTCTCGTAACAATAGAAGCTC 356
Query 298 AGTCTCCTTCTCCCGCCGCCGTTCAGACTCCTGAGCTCCGTCGTATTCGATCATACTCCG 357
||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 AGTCTTCTTCTCTCGCCGCCGTTCAGACTCCCGAGCTCCGTCGTATTCGATCATACTCCG 416
Query 358 TTCGCAACGCATCAGTCTCCGTTT-TAACGCAGCCGCGACGGAGATCGTGTGACGCTAGG 416
|||| ||||||||||||||||||| | ||||||||||||||||| ||||||| ||||
Sbjct 417 TTCGTAACGCATCAGTCTCCGTTTCGGA-TCAGCCGCGACGGAGATCATGTGACGTTAGG 475
Query 417 TCAAGCGCAAGCTGTCTCCAGGACTTGTTTGTCGATGATGACGAAGAACGGTTAGATAGT 476
||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||
Sbjct 476 TCAAGCGCAAGCTCTCTCCTGGACTTGTTTGTCGATGATGACGAAGAACGGGTGGATAGT 535
Query 477 TCGATTCGGAAGTCTCTGGTTCCGGATTT-------------gaa-a-gaagaagaagaa 521
|||||||| ||| |||||||||| ||||| ||| | ||||||||||||
Sbjct 536 TCGATTCGAAAGCCTCTGGTTCCAGATTTAAAAGAGGAGGAAGAAGAGGAAGAAGAAGAA 595
Query 522 gaagaTTACAACGATGGAGAAGATATCAAAGGTTTTGATAGGAA-G-ATTGTCGAAGAA- 578
||||||||| |||||||||||||||| |||||||||||| ||| | | | ||| |||
Sbjct 596 GAAGATTACTACGATGGAGAAGATATAAAAGGTTTTGAT--GAAGGCA-AGCCGAGGAAG 652
Query 579 AAAGGCGTAGAGAACAAGACGATGAAGGAGTTCATAGATCTAGATTGGGGAAACCAAATT 638
| | || |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 653 ATCGTCGAAGAGAACAAGACGATGAAGGAGTTCATAGATCTAGATTGGAGAAACCAGATT 712
Query 639 AAGAAGAACAATGGCAAAGATTTGAAGGTAGTAGTATCGGTTTTGAGTAGGAGATTGAAG 698
|||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 713 AAGAAGAACAATGGCAAAGATTTGAAGGAAATAGCATCGGTTTTGAGCAGGAGATTGAAG 772
Query 699 AATTTTACACTGAATAAGAGAATTGACGAAAAATCGGATTCTAGATTCGCCGGAAATGTG 758
||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||| ||||
Sbjct 773 AATTTTACATTGAATAAGAGAAATGACGAAAAATCAGATTCCAGATTCGCCGGAATTGTG 832
Query 759 AATGGTCGTCGCTCATGTGATGTAGATCCTAGATTGTCTCTTGATGGAGGTAGGATCTCG 818
|||||||||| ||| | |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 833 AATGGTCGTCACTCTTCTGATGTGGATCCTAGATTGTCTTTTGATGGAGGTAGGATCTCG 892
Query 819 TTTGAGAAACCTAGGGCTTCGTGGGATGGTTGCTTGATTGAAAAATCATATCATAAGCTA 878
||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 893 TTTGAGAAACCTAGGTCTTCATGGGATGGTTGCTTGATTGAAAAATCATATCACAAGCTT 952
Query 879 ACGACATTGTCTACTGTGACGGAAGATGCTAAAGCTAAATGTGGTGTTgaagaagaagaa 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACGACATTGTCTACTGTGACGGAAGATGCTAAAGCTAAATGTGGTGTTGAAGAAGAAGAA 1012
Query 939 gaagaagaagaagGGGAGGAGAAGAGTCCAGGTGGGACGGTTCAAACGAAGAACTATTAC 998
| || || | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GTAG-AG--G-A--GAAGGAGAAGAGTCCAGGTGGGACGGTTCAAACGAAGAACTATTAC 1066
Query 999 TCGGATTCTCGTCGGAGAAGGAGTTTTGATCGATCGGTTTCGATTAAGAGACAAGGATTG 1058
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1067 TCGGATTCTCGTCGGAGAAGGAGTTTTGATCGGTCGGTTTCGATTAAGAGACAAGGATTG 1126
Query 1059 CTTGAGGTTGATGAATTGAGAGGTATATCGAATGCTAAGGTATCACCTGAAACTGTTGGT 1118
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1127 CTTGAGGTTGATGAATTGAGAGGTATATCGAATGCAAAGGTATCACCTGAAACTGTAGGT 1186
Query 1119 TTGTTTCATGGTGCTAAGTTATTAGTTACAGAGAAGGAACTTAGGGATTCGAATTGGTAT 1178
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1187 TTGTTTCATGGTGCTAAGTTATTGGTTACAGAGAAGGAACTTAGGGATTCGAATTGGTAT 1246
Query 1179 TCG-TCTAAAAATGTTAAATCAGAGAGCAAAAAATTAGTTTCTAAAGGAAAGATTTGTAT 1237
||| | ||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1247 TCGAT-TAAAAATGTCAAACCAGAGAGTAAAGAATTAGTTTCTAAAGGAAAGATTTGTAT 1305
Query 1238 TGCTGCTGGTG---AGGGGAAGAAGCAGGATAGTGTGGAGTTAAAGAAACCTAGGAAGAA 1294
||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1306 TGCTGCTGGTGGTGAGGGGAAGAAGCAGGATAGTGTTGAGTTAAAGAAACCTAGAAAGAA 1365
Query 1295 ATGGCCAAAGGGGTGGAACATTTGGGGATTGATACAGAGGAAAAGCGAGGCGAAGAACGA 1354
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1366 ATGGCCAAAGGGATGGAACATTTGGGGATTGATACAGAGGAAAAACGAGGCGAAGAACGA 1425
Query 1355 GATAAAAACTGAGCAAAGTTTGAAACTTGAAGGAAATGCGGTTGAGGGTTCTTTGGCTGA 1414
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 GATAAAGACTGAGCAAATTTTGAAACTTGAAGGAAATGCGGTTGAGGGTTCTTTGGCTGA 1485
Query 1415 GTCTCTGTTAAAGCTTAGGAGAGTAGGTAAAGGAGAAACCAATGGTGGTGTTAGTGAAAA 1474
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1486 ATCTCTGTTAAAGCTTAGGAGAGTAGGTAAAGGAGAAACCAATGTTGGTGTTAGTGAGAA 1545
Query 1475 GCTTTTGAAAAGCTATAGTGTAAGAGCGAGAAAGTCATGCGATGGTGTGCTTAGTAGTGC 1534
|||||||||||||||||||||||| ||||||||||| |||||||| |||| |||| ||||
Sbjct 1546 GCTTTTGAAAAGCTATAGTGTAAGTGCGAGAAAGTCTTGCGATGGCGTGCGTAGTGGTGC 1605
Query 1535 TGCCGTAGTCAGTGGCTTTGAAGGAGGAAGAAGTTCTTGTGATGGTCTGTTTCATGGATC 1594
| | | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1606 TAACATTGTCAGTGGCTTTGAAGGTGGAAGAAGCTCTTGTGATGGTCTGTTTCATGGATC 1665
Query 1595 TATTAACAGTGTTGAGGTTGGAAGAAGCTCGTGTGACGGATTGGTTAATGGTATTGAGAG 1654
||||||||||||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||
Sbjct 1666 TATTAACAGTGTTGAGGCTGGAAGAAACTCTTGTGATGGATTGGTTAATGGCATTGA-AG 1724
Query 1655 -CAAACGAAATCATC-T-T-CTCCAGAGAAACGCAAATGTTGGTACGGGC-GCCCGAGAA 1709
||||| |||||||| | | ||||||||||||||||||||||||||| || ||| ||||
Sbjct 1725 GCAAACAAAATCATCATCTTCTCCAGAGAAACGCAAATGTTGGTACGTGCAGCCA-AGAA 1783
Query 1710 AACCTTGATAACAGTTTGTTTAGATTCTATTTGACTCCGGCAAGGAGCCATAAGACTAGC 1769
|||||||| || ||| |||||||||||||| ||| ||||| || ||||||||||||||||
Sbjct 1784 AACCTTGAGAAGAGTATGTTTAGATTCTATCTGAGTCCGGTAAAGAGCCATAAGACTAGC 1843
Query 1770 AAATCAGGGAAAAGTAGGCTGAAGAATTAGT 1800
||||| ||||| |||||||||||||||||||
Sbjct 1844 AAATCCGGGAAGAGTAGGCTGAAGAATTAGT 1874
Score = 182 bits (98), Expect = 1e-44
Identities = 113/120 (94%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 1798 AGTCCGTATACCACATCAAAACCAATATTTGGTTTCCTTCTCATATCTTTTCCTCATAAA 1857
|||||||||| |||||||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 1963 AGTCCGTATATCACATCAACACCAATGTTTGTTTTCCTTCTCATATATTTTCCTCATAAA 2022
Query 1858 AGCACATCAACAATACATTGTTTTCT-CATGGTTTGCTTATACAAATACGACATTGCGTG 1916
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2023 AGCACATCAACAATACATTGTTTT-TGCATGGTTTGCTTATACAAATACGACATTGCGTG 2081
> AT5G58930.1 | Symbols: | Protein of unknown function (DUF740)
| chr5:23794315-23796461 REVERSE LENGTH=2147
Length=2147
Score = 621 bits (336), Expect = 7e-177
Identities = 847/1082 (78%), Gaps = 82/1082 (8%)
Strand=Plus/Plus
Query 761 TGGTCGTCGCTCATGTGATGTAGATCCTAGATTGTCTCTTGATGGAGGTAGGA-TCTCGT 819
||||||||| |||||||||||||||||||| ||||||||||| | |||| || |||| |
Sbjct 895 TGGTCGTCGTTCATGTGATGTAGATCCTAGGTTGTCTCTTGACGCAGGT-CGAGTCTC-T 952
Query 820 TT-GA-GAAACCTAGGGCTTCGTGGGATGGTTGCTTGATT-GAAAAATCATAT-CATAAG 875
|| || | | ||||| ||||| |||||||| || |||||| |||| | ||||| || |||
Sbjct 953 TTCGACG-AGCCTAGAGCTTCATGGGATGGATGTTTGATTGGAAAGA-CATATCCA-AAG 1009
Query 876 CT-A-ACGACATTGT-CTACTGTGACGGAAGATGCTAAAG-CTAAATG-TGGTGTTgaag 930
|| | || | |||| || ||||||| ||||| | ||||| || | || | | |
Sbjct 1010 CTGATAC--CTTTGTCCT-CTGTGACTGAAGACGTTAAAGCCT---CGCCGGAGAAG-AT 1062
Query 931 aa--gaagaagaa-gaagaagaagGGGAGGAGAAGAGTCCAGGTGGGACGGTTCAAACGA 987
|| | | |||| | ||| |||| ||| |||| | |||||||||||| | ||||||||
Sbjct 1063 AACCGGTG-AGAAGGTAGAGGAAGATGAGAAGAACAATCCAGGTGGGACAGCTCAAACGA 1121
Query 988 AGAACTATTACTCGGATTCTCGTCGGAGAAGGAGTTTTGATCGATCGGTTTCGATTAAGA 1047
| | || |||| |||||| || ||||||| || ||||||||| || | | ||
Sbjct 1122 GGGATTACTACTTGGATTCACGAAGGAGAAGAAGCTTTGATCGA------TC-A-T-CGA 1172
Query 1048 GACAAGGATTGCTTGAGGTTGATGAATTGAGAGGTATATCGAATGCTAAGGTATCACCTG 1107
|||| || |||||||| ||||||||||||| || ||| || |||||||||||||||||||
Sbjct 1173 GACATGGTTTGCTTGAAGTTGATGAATTGAAAGCTATTTCTAATGCTAAGGTATCACCTG 1232
Query 1108 AAACTGTTGGTTTGTTTCATGGTGCTAAGTTA-TTAGTTACAGAGAAGGAACTTAGGGAT 1166
|||||||||||||||||||||| || ||||| || ||||| |||| |||||||||||||
Sbjct 1233 AAACTGTTGGTTTGTTTCATGGAGCGAAGTTGCTT-GTTACTGAGAGGGAACTTAGGGAT 1291
Query 1167 TCGAATTGGTATTCGTCTAAA-AATGTT-AAATCAGAGAGCAAAAAATTAGTTTCTAAAG 1224
|||||||||||||| | | || ||| | ||| | |||||| | |||| ||||||||
Sbjct 1292 TCGAATTGGTATTC-TATTAAGAAT-TACAAACCGGAGAGCTTGGAGTTAGGTTCTAAAG 1349
Query 1225 GAAA-GATTTGTATTGCTGCTGGTGAGGGGAAGAAGCAGGATAGTGT-GGAGTTAAAGAA 1282
| | || || ||||||||||||||| ||||||||||||| || | || ||| |||||
Sbjct 1350 GTGTTGGTT-GTGTTGCTGCTGGTGAGGTGAAGAAGCAGGATGGTTTTGG-GTTGAAGAA 1407
Query 1283 -ACCTAGGAA-GAAATGGCC-AAAGGGGTGGAACATTTGGGGATTGATACAGAGGAAAAG 1339
| | |||| ||| ||| | ||||| |||||| ||||||||||||| ||||||||||
Sbjct 1408 GAGC--GGAAAGAACTGGTCTAAAGGA-TGGAACTTTTGGGGATTGATTCAGAGGAAAA- 1463
Query 1340 C-GA-G-G-CGAAGAACGAGATAAAAACTGAGCAAAGTTTGAAACTTGAAGGAAATGCGG 1395
| || | | |||||||||| || ||||| ||||||||||||||||||| ||||||| |
Sbjct 1464 CTGATGTGGCGAAGAACGAAATGAAAACCGAGCAAAGTTTGAAACTTGGAGGAAATACTA 1523
Query 1396 TTGAGGGTTCT-TTGGCTGAGTCTCTGTTAAAGCTTAGGAGAGTAGG-TAAAGGAGAAAC 1453
| ||||||||| ||| |||||||| |||| |||||||||||||| || ||||||||||||
Sbjct 1524 TGGAGGGTTCTCTTG-CTGAGTCTTTGTTGAAGCTTAGGAGAGT-GGCTAAAGGAGAAAC 1581
Query 1454 CAATGGTGGTGTTAGTGA-AAAGCTTTTGAA-AAGCTATAGTGTAAGAGCGAGAAAGTCA 1511
|||||||| ||| ||||| ||| || | || ||| || || || || |||||||||||
Sbjct 1582 CAATGGTGATGTCAGTGAGAAA-CTCAT-AAGAAGTTACAGCGTTAGTGCGAGAAAGTCT 1639
Query 1512 TGCGATGGTGTGCTTA-GTAGTGCTGCCGTAGTCAGTGGCTTTGAAGGAGGAAGAAGTTC 1570
|| |||||| || ||| || ||||| | | || | |||||||||||| |||||||| ||
Sbjct 1640 TGTGATGGTATG-TTACGTGGTGCTTCTATTGTTAATGGCTTTGAAGGTGGAAGAAGCTC 1698
Query 1571 TTGTGATGGTCTGTTTCATGGATCTATTAACAG-TGTTGAGGTTGGAAGAAG---CTCGT 1626
|||||||||||| |||||||| ||||| ||| | ||||||| ||||||||| || ||
Sbjct 1699 TTGTGATGGTCTATTTCATGGCTCTAT-AACTGGTGTTGAGACTGGAAGAAGAAGCTTGT 1757
Query 1627 GTGA---CGGATTGGTTAATGGTATTGAGAG-CAAACGAAATCATCTTCTCCAGAGAAAC 1682
|||| |||| || || |||| |||| || |||||| ||||||||||||||||| |
Sbjct 1758 GTGAAGACGGAATGTTTCATGGCGTTGA-AGGCAAACGGAATCATCTTCTCCAGAGTGAT 1816
Query 1683 G-CAAATGTTGGTACGGGCGC-CCGAGAAAACCTT-GATAACAGTTTGTTTAGATTCTAT 1739
| ||| ||||||| | | || || ||||| || || || || ||||||||||
Sbjct 1817 GACAAGC-TTGGTACTTACTCGCCT-GACAACCTCAGA-AATGGTATGGTTAGATTCTAC 1873
Query 1740 TTGACTCCGGCAAGGAGCCATAAGACTAGCAAATCAGGGAAAAGTAGGCTGAAGAATTAG 1799
||||| || || ||||||| ||| ||||| || || ||||||||||||| |||||||
Sbjct 1874 TTGACGCCATTAAACAGCCATATGACAAGCAAGTCCGGTAAAAGTAGGCTGATGAATTAG 1933
Query 1800 TC 1801
||
Sbjct 1934 TC 1935
> AT3G47000.1 | Symbols: | Glycosyl hydrolase family protein |
chr3:17313646-17316566 REVERSE LENGTH=2019
Length=2019
Score = 165 bits (89), Expect = 1e-39
Identities = 102/108 (94%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 1810 ACATCAAAACCAATATTTGGTTTCCTTCTCATATCTTTTCCTCATAAAAGCACATCAACA 1869
||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2019 ACATCAACACCAATGTTTGTTTTCCTTCTCATATATTTTCCTCATAAAAGCACATCAACA 1960
Query 1870 ATACATTGTTTTCT-CATGGTTTGCTTATACAAATACGACATTGCGTG 1916
|||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1959 ATACATTGTTTT-TGCATGGTTTGCTTATACAAATACGACATTGCGTG 1913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94879030050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5