BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485085
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2955 0.0
> AT3G47080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17338106-17340396 REVERSE LENGTH=2026
Length=2026
Score = 2955 bits (1600), Expect = 0.0
Identities = 1911/2055 (93%), Gaps = 45/2055 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTCTGTTTCTAACAAATTTCAGGAGTTCTCTCGTAAGCCTCTGAATTCGA 60
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1 TCTTCTTCTTCTCTGTTTCTAACAAAGTTCAGGAG--CTCTCGTAAGCCTCTGAATTCGA 58
Query 61 TTTGACCTCACAACCAT--ATAAAATTTTCCCGAGAAAA--TCTCTCTCAACGAACGAAT 116
|||||||| |||||||| | |||||| ||||||||||| |||||||||||||||||||
Sbjct 59 TTTGACCTGACAACCATACAAAAAATTCTCCCGAGAAAATCTCTCTCTCAACGAACGAAT 118
Query 117 TTCGAATCACCAAGAAGAAATTCTGAGAtttttttGCGTTTCATCGGAACAATGGAGGTA 176
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 119 TTCGAATCACCAAGAAGAAATTCTGAGATTTGTTTGCGTTTCATCGGAATAATGGAAGTG 178
Query 177 AAAGTAGCAACAACGACGTCGTTTCATTGGTCAGGACGTCACACGGCGATTCCTCAATGT 236
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 179 AAAGTAGCAACAACGACGTCGTTTCATTGGTCAGGACGACACACAGCGATTCCTCAATGT 238
Query 237 CCGTCATTTTCGCAAACCCTAACTTCATCAAAACGCCGTCGTTCTCGAGTAAAAGCCGGT 296
||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||
Sbjct 239 CCGTCATTTTCGCAAACCCTAACTTCATCTAAACGCCGTCGTTCTCGTGGAATAGCCGGT 298
Query 297 GATGTTTCCGTCGGAGGAGGATCTTTGAGATTAAAACCTTCGACGTTTCTCGGAACACAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GATGTTTCCGTCGGAGGAGGATCTTTGAGATTAAAACCTTCGACGTTTCTCGGAACACAA 358
Query 357 TCTGGGAAACTTCACCGATCTAAATCATGTGAGCTTTGGGAATTTTCTAATTCCGCCACG 416
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 359 TCTGGGAAACTTCACCGATCTAAATCATGTGAGCTTTGGCAATTTTCTAATTCCACCACG 418
Query 417 AAGAAGATAAGAACTGATGTGAAGAAGAAACATAATCCTTTAAGAAGAGTTTGTAGTGCA 476
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 AAGAAGATTAGAACTGATGTGAAGAAGAAACATAATCCTTTGAGAAGAGTTTGTAGTGCG 478
Query 477 AGCTCCGATTTCTTCTCC---GACGAAGCATTCTCTGTGAAAATGCAGGAATTAGCCTCA 533
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 479 AGCTCCGGTTTCTTCTCCTCCGACGAAGCATTCTCTGTGAAAATGCAGGAATTAGCTTCA 538
Query 534 CAATTCAGAAACTCCTTCGAAGAATCAGAAGAAGAGAACAAACAGAAATCAGAAGCAGTA 593
|||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CAATTCAGAAACGCAGGCGATGAAGAAGAAGAAGAGAACAAACAGAAATCAGAAGCAGTA 598
Query 594 GATAACGATAACGATAACAAGAATCATAGATTTGGTTCTATGAAGCTATTGCAAGAGTCT 653
|||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 599 GATAACGATAACGATAGCAATAATCATAGATTTGGTTCTTTGAAGCTATTACAAGAGTCT 658
Query 654 GTTCCAGGTTTAGCTTCGTTGGAAGCTCCATGGGCAGAGATGGTTAACCATTCAAGCATT 713
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 GTTCCAGGTTTAGCTTCTTTGGAAGCTCCATGGGCAGAGATGGTTAACCATTCAAGTATT 718
Query 714 GAAAGGAAAGCAAACAGTGTTGATTTACCTCTATCACTTAGGATAATAAAGAGGAAGCTA 773
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 GAGCGTAAAGCAAACAGTGTTGATTTACCTCTATCACTTAGGATAATAAAGAGGAAGTTA 778
Query 774 CAAGAAGAAGCGCTTAAAGAA-GCTAGTGCTACTACTTACTGTTCTATCAATAGAGCTTT 832
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAGAAGAAGCTCTTAA-GAAAGCTAGTGCTACTACTTACTGTTCTATCAATAGAGCTTT 837
Query 833 TTCTTCTATGGTTTTCATGATTGAGGAGCTTCATAGCTTTGCGTTGCAGACTAGAGTTGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 TTCTTCTATGGTTTTCATGATTGAGGAGCTTCATAGCTTTGCGTTGCAGACTAGAGTGGG 897
Query 893 TGTTCTTAAGCAGGTTAAGAAGGAAATGCACGCTTCATTGTTGTGGATTTTCCAACGTGT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGTTCTTAAGCAGGTTAAGAAGGAAATGCACGCTTCATTGTTGTGGATTTTCCAACGTGT 957
Query 953 GTTCTCTCAGACACCTACTTTGATGGTTTATGTGATGATC-TTATTGGCGAACTACACTG 1011
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 958 GTTCTCTCAGACACCTACTTTGATGGTTTATGTGATGATCCTT-TTGGCGAACTACACTG 1016
Query 1012 TGCATTCAGTTGCATCGAATCTAGCTATTGCGGCAGCTCCTCCACACTCTGATGTGGTTA 1071
|||||||||||||||| || ||| ||||||| ||| |||||||| | | || |||
Sbjct 1017 TGCATTCAGTTGCATCAAACCTACCTATTGCAGCATCTCCTCCA------G-T-TG-TTA 1067
Query 1072 CTAAAGGTCTGGATCGGATACAAGAAAGGATTGATTTAGGGCCTTTAGTAAGTGGCAGAG 1131
|||||||| ||||| || ||| ||||||||||||| | ||| ||| | ||
Sbjct 1068 ATAAAGGTCCGGATCAGACGCAACAAAGGATTGATTTTTCTTCGTTA--AAG-G--AG-- 1120
Query 1132 ATGGTAAGGAGCTTGATGGGTCCAAATGGTTAGGATCGATGAATTTTGACAAGGTCTCCC 1191
| || | ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1121 -TC-TACGAAGCTTGATGGGTCCAAATGGTTAGGATCGATCAATTTTGACAAGGTTTCCC 1178
Query 1192 ACTTACCGACACATCGAGACTCCGTTTCCGGAGAAGGGATGAGAGAAGAGGAAGTGAGTC 1251
|||| |||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1179 ACTTGCCGAGACATCGAGACTCGGTTTCAGGAGAAGGGATGAGAGAAGAGGAGGTGAGTC 1238
Query 1252 TGTGGAATTCGATGGTGGAAGAAGCAGATCAAATGCAAGATTCCTCTGTTGATCGTGATA 1311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1239 TGTGGAATTCGATGGTGGAAGAAGCAGATCAAATGCAAGATTCCTCTGTTGATCGTGACA 1298
Query 1312 TGAGATTGAGACTGGTTTCACCGATCAATGCAAGGATTGAATTGGACGATTATGCCAATT 1371
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1299 TGAGATTGAGACTTGTTTCACCGATCACTGCAAGGATTGAATTGGATGATTATGCCAATT 1358
Query 1372 ACACTAGAACAGAGCTTTTATATAAGATAGGTTTGGCTCAAGAGCC-GAACAACCATCTG 1430
|||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1359 ACACTAGAACTGAGCTTTTATATAAGATAGGTTTGGCTCAAGAGCCTGA-CAATCATCTG 1417
Query 1431 CTCCTAGCTAACTACGCTCAGTTCCTTTACCTCGTCACTCAAGACCATGAGAGAGCGGAG 1490
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1418 CTCCTAGCTAACTACGCTCAGTTCCTTTACCTCGTTACTCAAGACCATGAGAGAGCGGAG 1477
Query 1491 AACTGCTTCAAGAAAGCTATAGAGTCAGAAGATGTAGATGCAGAAGCGTACAGCAAATAC 1550
||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1478 AACTGCTTCAAGAAAGCAATAGAGTCAGAAGATGTAGACGCAGAAACGTACAGCAAATAC 1537
Query 1551 GCCATCTTCCTGTGGAAAGTTCGGAACGATCTCTGGGCTGCTGAGGAGAACTTTCTAGAA 1610
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1538 GCCATCTTCCTGTGGAAAGTTCGGAATGATCTCTGGGCTGCTGAGGAGAACTTTCTAGAA 1597
Query 1611 GCTATATCTGTAGACCCTACCAACTCCTAT-TACGCAGCCAACTACGCCAACTTCCTCTG 1669
|||||||||| ||||||||||||||||| | ||||| |||||||||||||| ||||||||
Sbjct 1598 GCTATATCTGCAGACCCTACCAACTCCT-TCTACGCCGCCAACTACGCCAATTTCCTCTG 1656
Query 1670 GCAA-ACCGGTGGTGAAGAGACGTGTTTCCCTTTAGAAGATTCTCCTCAGGAAATGGTTT 1728
| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1657 G-AATACCGGTGGTGAAGAGACGTGTTTCCCTTTAGAAGATTCTACTCAGGAAATGGTTT 1715
Query 1729 GAGAACGAGCGAATGGCAGTGAATGG-TGT-GGTTTATTTGCAGTGAAGAGACAGCTAC- 1785
||||| |||||||||||||||||||| ||| ||||| |||| |||||||||||||| ||
Sbjct 1716 GAGAAGGAGCGAATGGCAGTGAATGGATGTTGGTTTGTTTGGAGTGAAGAGACAGCGACA 1775
Query 1786 -GGAACTTAGGTACACGATAGAAGCGAGGAGGAAAAGTGTAAGTAGTGTTTTTGAGTGAA 1844
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1776 CGGAACTTAGGTACACGATAGAAGCAAG-AGGAAAAGTGTAAGTAGTGTTTTTGAGTGAA 1834
Query 1845 CCAGTGCGGCCGATGAAACATTGCTTCTCTTTGGTTCttttttctttttgcttttgccta 1904
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 CCATTGCGGCTGATGAAACATTGCTTCTCTTTGGTTCTTTTTTCTTTTTGCTTTTGCCTA 1894
Query 1905 atttttCACTCAGTAGTATACACGGACGCAGATTCCATCGAATAAGAAGAACAAGTGTAG 1964
|||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||
Sbjct 1895 ATTTTTCACTCAGTAGTATATACGGTCGCAGATTCCATCGAATAAGAA---CATGTGTAG 1951
Query 1965 ATCCAACACTATTACACTAATAATAAACACTGGGTATTATTTTTGGTGAAATAATAAGTG 2024
||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1952 ATCCAACACTATTACACGAATAATAAACACTGAGCATTGCTTTTGGTGAAATAATAAGTG 2011
Query 2025 AGCATATTTGGATCG 2039
||||||||| ||||
Sbjct 2012 CGCATATTTGAATCG 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053697085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5