BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485089
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47130.1 | Symbols: | F-box associated ubiquitination effec... 1312 0.0
AT3G47140.1 | Symbols: | F-box associated ubiquitination effec... 494 8e-139
AT3G47150.1 | Symbols: | F-box and associated interaction doma... 320 1e-86
> AT3G47130.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:17353714-17354851 FORWARD LENGTH=1083
Length=1083
Score = 1312 bits (710), Expect = 0.0
Identities = 878/956 (92%), Gaps = 23/956 (2%)
Strand=Plus/Plus
Query 35 CACGGATCTACATTCCTCTTGATCTCCAAAT-TAATACACTCTTAAGATTGCCTGTGAA- 92
||| ||| ||||||||||| ||||| || || | ||||||| |||||||||||||||||
Sbjct 105 CACCGATTTACATTCCTCTCGATCTTCAGATCT-ATACACTTTTAAGATTGCCTGTGAAG 163
Query 93 CCAATATTTCAAAAAACAGCACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTCCT 152
| || || | | | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 164 TCTTTA-TT-GAGATTCCGCACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTTCT 221
Query 153 CATTTCTTTTCAGGACTTTCACGGTAAAAATCTTATGTTAGTCTCGTCGCCTAACCCATA 212
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 222 CATTGCTTTTCAGGACTTTCACGGTAAAAAGCTTATGTTAGTCTCGTCGCCTAACCCATA 281
Query 213 CGTA------TCTTCCTCTTCCTCTTCTTCATGTTGTGTACCCTATAAAGATCTGAACGT 266
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 282 CGTATCTTCCTCTTCCTCTTCCTCTTCTTCATGTTGTGTACCTTATAAAGATCTGAACGT 341
Query 267 CTTTAAAATAAATGGGAAACTAGTGTATAATGCGGTTCGGGGCTTGATCTGCTTAAGTAG 326
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 342 CTTTAAAATTAATGGGAAACTAGTGTATAATGCGGTTCGGGGCTTGATCTGCATAAGTAG 401
Query 327 ATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTTTCCCCAACTCA 385
| ||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 402 ACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCCCAACTCA 460
Query 386 AGTACAAAGAAGATCCAAAAAATTCTCA-ACGCCCCAATTATTTTGTTGGGTACGATTCT 444
|||||||||||||||| |||| || | | | |||||||||||||||||||||||||||||
Sbjct 461 AGTACAAAGAAGATCC-AAAACTTTTTACATGCCCCAATTATTTTGTTGGGTACGATTCT 519
Query 445 ATTGAAGATCAATACAAAGTGCTAGCAATTGATCGTTTGCATTGGAGAATGGAGCATAAG 504
||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||
Sbjct 520 ATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCATTTGAGAATGGAGCACAAG 579
Query 505 ATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTGCATGTCCTCAT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 ATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTGCATGTCCTCAT 639
Query 565 GTTTCTCATACCTCGGGGATGTATATGAACGGAACCCTGTACTACGGGGCGTCTCGGACG 624
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||
Sbjct 640 GTTTCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGGGCGTCTAGGACG 699
Query 625 GATATCGATCCCCCGAATAACAATTCTATAATTGTTAGTTTCGATGTTAGGCTTGAAACG 684
|||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 700 GATATCGATCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGTTAGGCTTGAAACG 759
Query 685 TTCAACATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGAGAATATGTGGCTT 744
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 760 TTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGAAAATATGTGGCTT 819
Query 745 GCTGA-ACGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATTGG 803
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 820 GCTGAGA-GGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATCGG 878
Query 804 TGTGGTCGAGAATGCACGTGAGGGTAGTTTTCGAATGTGGGTTGTGGAAGATGCTGAGAA 863
|||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 879 TGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGGAAGATGCTGAGAA 938
Query 864 AGAGGAATGGTCCATGAACACTTTTCATTTGCCTGAATCTGCTGTTGGCCTTGACTTCAA 923
|||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 939 AGAGGAATGGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCTGGCCTTGACTTCAA 998
Query 924 GGTCGATCATGAATGCCTTTTATACAGGCGAGATTTGTCTGGTTC-GAAAAGAATT 978
| |||||| || |||||||||| ||||||||||||| ||||| |||| |||||
Sbjct 999 ---C-ATCATGGATACCTTTTATACCGGCGAGATTTGTCAGGTTCCGAAA-GAATT 1049
> AT3G47140.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:17357026-17357801 FORWARD LENGTH=675
Length=675
Score = 494 bits (267), Expect = 8e-139
Identities = 425/499 (85%), Gaps = 19/499 (4%)
Strand=Plus/Plus
Query 486 TTGGAGAATGGAGCATAAGATT-CTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTC 544
||||||| | ||||| ||| || || |||||||| |||||||||||||||||||| ||
Sbjct 63 TTGGAGATTAGAGCACAAGGTTATTG-TATTGGGAGGAGAAGAAGCTTGGAGAGAGACTT 121
Query 545 CATGTGTTGCATGTCCTCATGTT-TCTCATACCTC-GGGGATGTATATGAACGGAACCCT 602
| ||| | || | ||||||| || || ||||| | |||||||| ||||||||| |||||
Sbjct 122 CGTGTATCGCCTTTCCTCATATTGGCT-ATACC-CAGGGGATGTGTATGAACGGTACCCT 179
Query 603 GTACTACGGGGC-GTCTCGGACGGATA-TCGATCCCCCGAATAACAATTCTATAATTGTT 660
|||||||| || | || ||| ||| | || || ||||| ||| ||||||||||||||
Sbjct 180 CTACTACGGAGCTGCCT-GGAAGGACACTC-ATTCCCCGGATAGTAATTCTATAATTGTG 237
Query 661 AGTTTCGATGTTAGGCTTGAAACGTTCAACATCATCAATGTACCAAGCAAAGTTCTACCA 720
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 AGTTTTGATGTTAGGCTTGAAACGTTCAACATCATCAATGTACCAAGCAAACTTCTACCA 297
Query 721 ATGGGTTATGAGAATATGTGGCTTGCTGAACGGTGGAGGAATCTTACAGATAAAACTCTG 780
||| |||||||||||||||| | | | || | | || || ||||||||||||||||
Sbjct 298 GTGGATTATGAGAATATGTGGGTAG-TTAA--GACGTTGATTCCTACAGATAAAACTCTG 354
Query 781 ATCAACTACAAAGGAAAAATTGGTGTGGTCGAGAATGCACGTGAGGGTAG-TTTTCGAAT 839
|||||||||||||||||| || ||||||| ||| || | ||||||||| | |||||||||
Sbjct 355 ATCAACTACAAAGGAAAAGTTAGTGTGGTTGAGCATCCTCGTGAGGGT-GCTTTTCGAAT 413
Query 840 GTGGGTTGTGGAAGATGCTGAGAAAGAGGAATGGTCCATGAACACTTTTCATTTGCCTGA 899
||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 414 GTGGGTTGTAGAAGATGTTGAGAAAGAGGAATGGTCCATGAACACGTTTCATTTGCATGA 473
Query 900 ATCTGCTGTTGGCCTTGACTTCAAGGTCGATCATGAATGCCTTTTATACAGGCGAGATTT 959
||||| |||||||||||||||||||||| || |||| |||||||||| ||||||||||
Sbjct 474 ATCTGTTGTTGGCCTTGACTTCAAGGTC-AT---GAATACCTTTTATACTGGCGAGATTT 529
Query 960 GTCTGGTTCGAAAAGAATT 978
||||||||| ||||| |||
Sbjct 530 GTCTGGTTCCAAAAGTATT 548
> AT3G47150.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:17358591-17359765 FORWARD LENGTH=1083
Length=1083
Score = 320 bits (173), Expect = 1e-86
Identities = 334/408 (82%), Gaps = 26/408 (6%)
Strand=Plus/Plus
Query 106 AAACAG-CACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTCCTCATTTCTTTTCA 164
|||| | ||||| || || || ||||| ||||||||||| ||||| |||||| |||||||
Sbjct 147 AAACCGTCACTTTAATATCACTTCTTCTTCAGCTCCTCCTCGTCTTCTCATTGCTTTTCA 206
Query 165 GGACTTTCACGGTA-AAAATCTTATGTTAGTCTCGTCGCCTAACCCATACGTATCTTCCT 223
||||||| |||| | |||| ||| || |||| ||||||||||||||| ||||||||||||
Sbjct 207 GGACTTTTACGG-AGAAAAGCTTCTGCTAGTTTCGTCGCCTAACCCAAACGTATCTTCCT 265
Query 224 CTTCCTCTTCTTCATGTTGTGTACCCTATAAAGATCTGA--AC-GTCTTTAAAATAAATG 280
||||| ||||||||||||||||||||||||||||||||| | ||| ||| ||||||
Sbjct 266 CTTCCACTTCTTCATGTTGTGTACCCTATAAAGATCTGAGTAAAGTCG--AAA-TAAATG 322
Query 281 G--GAAACTAGTGTATAATGCGGTTCGGGGCTTGATCT-GCTT--AA-GTAGATTAA-GT 333
| |||| || |||||||||||| |||| |||| || |||| || ||||||||| |
Sbjct 323 GACGAAAG--GTTTATAATGCGGTTTGGGGATTGA-CTTGCTTTGAAAGTAGATTAAAG- 378
Query 334 GTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCATATTTTTCCCCAACTCAAGTACAAA 393
|| |||||||||||||| ||||| ||| |||||||||| ||||||||| |||| | ||||
Sbjct 379 GTTGGGATTTGTAACCCCAGCACGAGGGAGCTGCATATGTTTCCCCAAATCAAATTCAAA 438
Query 394 GAAG-ATCCAAAAAATTCTCAACGCCCCAAT-TATTTTGTTGGGTACGATTC-TATTGAA 450
|| ||||| | | || || | || || | || ||| ||||||||||| | |||||||
Sbjct 439 -AATTATCCAGACATTTTTCCATGCATCA-TGTACTTTCTTGGGTACGAT-CGTATTGAA 495
Query 451 GATCAATACAAAGTGCTAGCAATTGATCGTTTGCATTGGAGAATGGAG 498
||||||||||||||||| || |||||| ||| | ||||||| |||||
Sbjct 496 GATCAATACAAAGTGCTCGCCATTGATAATTTACCTTGGAGATTGGAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5