BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485090
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47160.2 | Symbols: | RING/U-box superfamily protein | chr3... 1070 0.0
AT5G58787.1 | Symbols: | RING/U-box superfamily protein | chr5... 316 2e-85
> AT3G47160.2 | Symbols: | RING/U-box superfamily protein | chr3:17359991-17362118
REVERSE LENGTH=1260
Length=1260
Score = 1070 bits (579), Expect = 0.0
Identities = 638/666 (96%), Gaps = 5/666 (1%)
Strand=Plus/Plus
Query 433 GGTATCACAGACCTGGATGACCGCAAACAGAAAGAGGTCTGCAAAATACGGTACAGAAAT 492
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 597 GGTATCACAGACCTGGATGATCGTAAACAGAAAGAAGTCTGCAAAATACGGTACAGAAAT 656
Query 493 AAAAGATGAGACTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGAATG 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 -AAAGATGAGACTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGAATG 715
Query 553 CGGGATTTGTATGGAGATGAACAACATGGTTGTTCTCCCCAATTGTACCCATTCTTTATG 612
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 716 CGGGATTTGTATGGAGATGAACAACATGGTGGTTCTCCCTAATTGTACGCATTCTTTATG 775
Query 613 CATCAAGTGTTACCGCGATTGGCATGGGAGGTCAGAATCATGCCCTTTTTGCCGAGACAG 672
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 776 CATCAAGTGTTACCGCGATTGGCACGGGAGGTCAGAATCATGCCCTTTTTGCCGAGACAG 835
Query 673 TCTTAAGAGAGTAAACTCAGGGGACTTGTGGATGTTAATGGAGAAATCGGATACGGTCAA 732
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 836 TCTTAAGAGAGTAAACTCAGGGGACTTATGGATGTTAATGGAGAAATCCGATACGGTTAA 895
Query 733 TATGTATACAATTGAGCGGGAGAATAAGAAGAGGCTGTTTGTGTACATAGAGAAACTACC 792
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 896 TATGTATACAATTGAGCGGGAGAATAAGAAGAGGTTGTTTGTGTATATAGAGAAGCTACC 955
Query 793 TCTAGTGGTTCCAGATCAAGTGTTTGCGTCTTCTCCTTACGATTGCCATGTCAAGTAAAT 852
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 956 TCTAGTGGTTCCAGATCAAGTGTTTGCTTCTTCTCCTTATGATTGCCATGTCAAGTAAAT 1015
Query 853 AAGAAGAAGAAGAGCTTTGGCAAAAGCCGAAACCGGGTCCGGTAAACTTTTATCTGAAT- 911
|||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1016 AAGACGGAGAAGAGCTTTGGCAAAAGCCGAAACCGGGTCTGGTAAACTTTTATCTGAATG 1075
Query 912 -ATATGTATATAATGTTTTAGAGTAGTAGTAAGTAATATAGTGTAAAC-ATTTCTGGGGG 969
||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 1076 TATATGTATATAATGTTTTAGAGTAGTAGTAAGTAATATAGTGTAA-CTATTTCTTGGGG 1134
Query 970 AAGTCCATTTCTACTTGCTTTTCTTTTTATCTGCATTTGGCTTTTGGTTCCCAAAAACTC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AAGTCCATTTCTACTTGCTTTTCTTTTTATCTGCATTTGGCTTTTGGTTCCCAAAAACTC 1194
Query 1030 TTATTTCTATTGTACATTCATGTCTGAATTTAAAAACCTCTTCTTCAAGAAGTGGCTTTT 1089
|||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1195 TTATTTCTGTTGTACATTCATGTCTGAATTTAATAACCTCTTCTTCAAGAAATGGCTTTC 1254
Query 1090 ACTCAC 1095
||||||
Sbjct 1255 ACTCAC 1260
Score = 353 bits (191), Expect = 2e-96
Identities = 209/218 (96%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 214 AGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGCTATCTTACAA 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 344 AGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGCTATCGTACAC 403
Query 274 TCCGGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATCTTGCCGGTAC 333
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 404 TCCAGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATCTTGCTGGTAC 463
Query 334 CCTCGGTTTGCTCAGAGTTCTTATTTACATGACATATGCGGATGGGAAAACCACAATGTC 393
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 464 ACTCGGTCTGCTCAGAGTTCTGATTTACATGACCTATGCGGATGGGAAAACCACAATGTC 523
Query 394 GGTTTATGAGAGAAAAACCAGTATTAAAGATTTCTATG 431
|||||||||||||||||| |||||||||||||||||||
Sbjct 524 GGTTTATGAGAGAAAAACAAGTATTAAAGATTTCTATG 561
Score = 289 bits (156), Expect = 5e-77
Identities = 210/232 (91%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 1 TCTGATCATCGAATTTGGGTGAAGAAATATCTTTTCTATCTAATTGCTAAAAGGAAAAGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCTGATCATCGAATTTGGGTGAAGAAATATCTTTTCTATCTAATTGCTAAAAGGAAAAGC 136
Query 61 ATCAAACTTTGTTTTCATTTGCTTCTTCTA-------------TCTTC-T-T--C-TT-A 101
|||||||||||||||| ||||||||||||| ||||| | | | || |
Sbjct 137 ATCAAACTTTGTTTTC-TTTGCTTCTTCTATCTTCTTCTTCTTTCTTCTTCTCGCTTTAA 195
Query 102 TACTTTTTGATTCCTCTGTTCGTTTGATGAGAATTTGATTTTAAATGGCAAAAGTTTCGT 161
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 196 TACTCTTTGATTCCTCTGTTCGTTTGATGAGAATTAGATTTTAAATGGCAAAAGTTTCGT 255
Query 162 TTAAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACGCTAACACTGT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTAAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACGCTAACACTGT 307
> AT5G58787.1 | Symbols: | RING/U-box superfamily protein | chr5:23742450-23744604
FORWARD LENGTH=1292
Length=1292
Score = 316 bits (171), Expect = 2e-85
Identities = 247/284 (87%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 146 ATGGCAAAAGTT-TCGTTT-AAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACG 203
||||| ||| || || ||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 284 ATGGCTAAA-TTATC-TTTCAAGGATTCTCTTAAAGCTCTTGAAGCCGATATTCAACACG 341
Query 204 CTAACACTGTAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGC 263
|||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 342 CTAATACACTAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGCGTTCAGATGAGAT 401
Query 264 TATCTTACAATCCGGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATC 323
|||| |||| ||| ||||||| ||||| |||||||||||||||||||||||||| | |
Sbjct 402 TATCATACAGCCCGACTGCTCAATTTTTTCTTTTTCTTGTACAATGGACTGATTGTAAGC 461
Query 324 TTGCCGGTACCCTCGGTTTGCTCAGAGTTCTTATTTACATGACATATGCGGATGGGAAAA 383
|||| ||| ||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 462 TTGCTGGTTTCCTCGGTTTACTCAGAGTTCTTATTTATATGACTTATGCAGATGGGAAAA 521
Query 384 CCACAATGTCGGTTTATGAGAGAAAAACCAGTATTAAAGATTTC 427
| || ||||||||||| || |||||| ||||||||| ||| |||
Sbjct 522 CAACCATGTCGGTTTACGAAAGAAAAGCCAGTATTAGAGAGTTC 565
Score = 289 bits (156), Expect = 5e-77
Identities = 335/419 (80%), Gaps = 22/419 (5%)
Strand=Plus/Plus
Query 431 GGGGTATCACAGACCTGGATGACCGCAAACAGAAAGAGGTCTGCAAAATACGGTACAGAA 490
||||| | |||||| | |||||| ||||||| |||||||| ||||| || || |||||||
Sbjct 603 GGGGTGTTACAGACATAGATGACAGCAAACAAAAAGAGGTATGCAAGATGCGATACAGAA 662
Query 491 ATAAAAGATGAGA-CTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGA 549
| || ||||||| | | ||| | | ||||||||||| |||||||| ||||||||
Sbjct 663 A-GAAGGATGAGAGC-G-AAA--T---G---TCGGAGATTGAGATCGAGAGGGAAGAAGA 711
Query 550 ATGCGGGATTTGTATGGAGATGAACAACATGGTTGTTCTCCCCAATTGTACCCATTCTTT 609
||| || || |||||||||||||||| || ||| || || || || ||||| ||||||||
Sbjct 712 ATGTGGAATCTGTATGGAGATGAACAGCAAGGTGGTGCTACCAAACTGTACTCATTCTTT 771
Query 610 ATGCATCAAGTGTTACCGCGATTGGC-ATGGGAGGTCAGAATCATGCCCTTTTTGCCGAG 668
|||||||||||||||||||||||||| | ||||| ||| | |||||||| || ||| |||
Sbjct 772 ATGCATCAAGTGTTACCGCGATTGGCGA-GGGAGATCACAGTCATGCCCGTTCTGCAGAG 830
Query 669 ACAGTCTTAAGAGAGTAAACTCAGGGGACT-TGTGGATGTTAATGGA-GAAATCGGATAC 726
|||| ||||| |||||| | ||||| || | | |||||||| |||| ||| | |||||
Sbjct 831 ACAGCCTTAAAAGAGTAGATTCAGGTGA-TCTCTGGATGTTTTTGGACCAAAAC-GATAC 888
Query 727 GGTCAATATGTA-TACAATTGAGCGGGAGAATAAGAAGA-GGCTGTTTGTGTACATAGAG 784
|| ||| | | | |||| | | ||||| |||| | | ||||| ||||||| |||
Sbjct 889 AGTGAATCT-CACTGCAATCGCTAGAGAGAACCAGAA-ACGATTGTTTATGTACATTGAG 946
Query 785 AAACTACCTCTAGTGGTTCCAGATCAAGTGTTTGCGTCTTCTCCTTACGATTGCCATGT 843
|| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 947 AAGTTACCACTAGTGGTTCCAGATCAAGTGTATGCGTCTTCTCCTTACGATTTCCATGT 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5