BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485094

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47295.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   564    2e-160


> AT3G47295.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 13 Blast 
hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:17427950-17428511 
FORWARD LENGTH=460
Length=460

 Score =  564 bits (305),  Expect = 2e-160
 Identities = 376/408 (92%), Gaps = 14/408 (3%)
 Strand=Plus/Plus

Query  2    ATTGGATAACCACAACCAGAAT--ATTTTGGTACCATCATTTCTATAAATATATACGACG  59
            ||||||||||||||||||||||  ||||| | | ||||||||||||||||||||||||| 
Sbjct  9    ATTGGATAACCACAACCAGAATCGATTTT-GAATCATCATTTCTATAAATATATACGAC-  66

Query  60   T-ATACATACATATAAACATACCTCTCAAACCAAACTGAGATGAGTTTTGGATCTCGTCT  118
            | ||||||||||||  |||||||||| |||| |||||||||||||||||||| |||||||
Sbjct  67   TCATACATACATAT--ACATACCTCTTAAACAAAACTGAGATGAGTTTTGGAACTCGTCT  124

Query  119  TCTTTTGTTTCTCATACTAATC-CTTCCACTTGTAACATCTTCATCCCAAAACACTCCTT  177
            |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |||
Sbjct  125  TCTTTTGTTTCTCATACTAA-CACTTCCACTTGTAACATCTTCATCCCCAAACACT-CTT  182

Query  178  C-TGTTTCAGGATTTGGGAAGACAGGGACTAAAAGTGGATCCTTAATGGTGACCATCGAG  236
            | |||||||||| ||| |||||||||||||| |||| ||| ||| ||| |||||||||||
Sbjct  183  CATGTTTCAGGAATTGTGAAGACAGGGACTACAAGTAGATTCTTGATGATGACCATCGAG  242

Query  237  GATTATGATGATCCATCTGCAAACACCAGACACGATCCCAGCGTTCCGACCAATGCAAAG  296
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GATTATGACGATCCATCTGCAAACACCAGACACGATCCCAGCGTTCCGACCAATGCAAAG  302

Query  297  GCTGACACAACACCTTAAAACTCTTTTGAGTTTACTTGTTTAGTCTATGTTGaataa-ta  355
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct  303  GCTGACACAACACCTTAAAACTCTTCTGAGTTTACTTGTTTAGTCTATGTTGAATAAATA  362

Query  356  aataaatatataataatCTCTCT-TTC-GAGTGAGCTGAATTCTCCAT  401
            |||| |||||||||||||||||| ||  || |||||||||||||||||
Sbjct  363  AATATATATATAATAATCTCTCTCTTTTGACTGAGCTGAATTCTCCAT  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5