BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485095
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47300.1 | Symbols: SELT | SELT-like protein precursor | chr... 953 0.0
> AT3G47300.1 | Symbols: SELT | SELT-like protein precursor | chr3:17428443-17429623
REVERSE LENGTH=940
Length=940
Score = 953 bits (516), Expect = 0.0
Identities = 615/663 (93%), Gaps = 6/663 (1%)
Strand=Plus/Plus
Query 1 AATTCCCTCTCTGAGATTTCAAAATCCGCCATGGACAAAACACAATTGATCTTGTTAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 AATTCCCTCTCTGAGATTTCAAAATCCGCCATGGACAAAACACAATTGATCTTGTTAGGA 98
Query 61 CTACCGATTTTCTTGCTTT-T-CACGGATCTCTTAAATCTCTTCACTCCTCCACCGCCGA 118
|||||||||||| |||||| | | || ||||||| ||||||||||| |||||||||||||
Sbjct 99 CTACCGATTTTCCTGCTTTGTTC-CG-ATCTCTTCAATCTCTTCACGCCTCCACCGCCGA 156
Query 119 AATCTCAGCAACAACCACCACCGTCTATCTCAGAAACCCTAGATTTCCCCTCACAGAAGT 178
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 157 AATCTCAGCACCAATCACCACCGTCTATCTCAGAAACCCTAGATTTCCCCGCACAGAAGT 216
Query 179 CAAGTGGTGTTGGATATGGAAACACCGTAGAGATCAACTTCTGCGTTTCCTGCTCTTACA 238
||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 217 CAACTGGTGTTGGATATGGAAACACCGTAGAGATCAACTTCTGCATCTCCTGCTCGTACA 276
Query 239 AGGGAACTGCAGTAACCATGAAGAAGATGTTAGAGACAGCTTTTCCTGGATTAGATGTAG 298
|||||||||| ||| | ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 277 AGGGAACTGCTGTATCAATGAAGAAGATGTTAGAGAGTGTTTTTCCTGGATTAGATGTAG 336
Query 299 TTCTTGCGAATTACCCGGCACCAACGCCAAAACGTATTCTTGCTAAGGTTGTGCCAGTTG 358
||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 337 TTCTTGCTAATTACCCTGCACCAGCACCAAAACGTATTCTTGCTAAGGTTGTGCCAGTTG 396
Query 359 CTCAGATGGGAGTTATTGGTCTCATTATGGGAGGTGAACATATATTTCCTATGATTGGAA 418
||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 397 CTCAGGTGGGTGTTATTGGTCTCATTATGGGAGGTGAACAGATATTTCCCATGATTGGAA 456
Query 419 TTGCGCAGCCTCCTGCTTGGTACCACTCTTTGAGAGCGAATAGATTCGGGTCCATGGCTT 478
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 457 TTGCGCAGCCTCCTGCTTGGTATCACTCTTTGAGAGCGAATAGATTCGGGTCCATGGCTT 516
Query 479 CCACTTGGCTTCTCGGTAACTTCCTGCAGTCTTTCTTGCAAAGTTCTGGCGCCTTCGAAG 538
||||||||||||| ||||||||| |||||||||| |||||||||||||| || || ||||
Sbjct 517 CCACTTGGCTTCTTGGTAACTTCTTGCAGTCTTTTTTGCAAAGTTCTGGTGCTTTTGAAG 576
Query 539 TTAGCTGCAATGGAGAATTGGTGTTCTCTAAATTGAAAGAAGGGAGATTCCCAGGGGAGA 598
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 577 TTAGCTGCAATGGAGAATTGGTGTTTTCTAAATTGAAAGAAGGGAGATTTCCGGGGGAGA 636
Query 599 TTGAGCTCAGAGAACTCGTCAGTGGAAC-ATTGACGAAACCGTTCGTCGCAGACAGCTAC 657
||||| | ||||| ||| |||||||||| || ||||||||| |||||| ||| ||||||
Sbjct 637 TTGAGTTGAGAGATCTCATCAGTGGAACTAT-GACGAAACCATTCGTCACAGGCAGCTAT 695
Query 658 TGA 660
|||
Sbjct 696 TGA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5