BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485103
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47380.1 | Symbols: | Plant invertase/pectin methylesterase... 911 0.0
> AT3G47380.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:17457795-17458570 FORWARD
LENGTH=776
Length=776
Score = 911 bits (493), Expect = 0.0
Identities = 573/611 (94%), Gaps = 7/611 (1%)
Strand=Plus/Plus
Query 1 ATGGCACAACAAATATTCTACACTTTCTTCCTATTCCTCTTATCCACGACGATGCTCAC- 59
|||||| ||||||||||||||||| |||| |||||||||||||||||| | || |||||
Sbjct 1 ATGGCAAAACAAATATTCTACACTCTCTTTCTATTCCTCTTATCCACGGCTATTCTCACG 60
Query 60 G-GT-GTCTTCCGCCCCCGTG-GCCGCAATAACTTCAAAACGTGCTATAAACTTCATACA 116
| || ||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGTCGTCCTCCGCCCCC-AGAGCCGCAATAACTTCAAAACGTGCTATAAACTTCATACA 119
Query 117 AGCCTCTTGCAAAGCCACTACATACCCAACCGTATGCGTCAACGCTCTCTCCGGTTACTC 176
|||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
Sbjct 120 AGCCTCTTGCAAAGCCACAACATACCCAACCGTATGCGTCAACTCTCTCACCGGTTACGC 179
Query 177 CAACTCCATCCAAACAAGCCCTCGACGTCTAGCCGAGACCGCACTCAATGTGACCGTGAC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAACTCCATCCAAACAAGCCCTCGACGTCTAGCCGAGACCGCACTCAATGTGACCGTGAC 239
Query 237 -CGAGGCACAGTCCACTAAGGTCTTCGTCTGGCGCTTGGGGCGTTTCAAGACTCTTAAGA 295
| |||| |||||||| ||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 240 TC-AGGCCCAGTCCACCAAGGTCTTCGTCTGGCGCTTGGGGCGTTTCACTAGTCTCAAGA 298
Query 296 AACGAGAGATTCAAGCCATTAAGGACTGCATTGAGGAGATCAATGATGCTGTTGACCGTT 355
||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 299 AACGAGAGATTCAAGCCGTTAAGGACTGCATCGAGGAGATCCATGATGCCGTTGACCGTT 358
Query 356 TGACCAAGTCGATCCATGAAGTGAAGATGTGTGGTAGTGCTAAAGGTCGTGACCAGTTTT 415
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGACCATGTCGATCCATGAAGTGAAGATGTGTGGTAGTGCTAAAGGTCGTGACCAGTTTT 418
Query 416 GGTTCCACATGAGCAATGCTCAAACGTGGACCAGCGCTGCTTTGACTAATGCAAACACTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTTCCACATGAGCAATGCTCAAACGTGGACCAGCGCTGCTTTGACTAATGCAAACACTT 478
Query 476 GCTCCGATGGGTTTGCGGGTCGGGTCATGGATGGGCGGATCAAGAACTCGGTCCGGGCAC 535
|||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||
Sbjct 479 GCTCCGATGGGTTTGCGGGTCGGGTCATGGATGGGCGGGTAAAGAACTCAGTAAGGGCAC 538
Query 536 GGATCTTGAATTTGGGAAGAGGAACTAGCAACGCTTTAGCATTGATCAATGCTTTTGCTA 595
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 539 GGATCTTGAATTTGGGAAGAGGAACTAGTAACGCTTTAGCCTTGATCAATGCTTTCGCTA 598
Query 596 AAAAATACTAA 606
|||||||||||
Sbjct 599 AAAAATACTAA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5