BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485109
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47450.1 | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | P-loo... 2782 0.0
> AT3G47450.1 | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | P-loop
containing nucleoside triphosphate hydrolases superfamily
protein | chr3:17483068-17486347 REVERSE LENGTH=1911
Length=1911
Score = 2782 bits (1506), Expect = 0.0
Identities = 1706/1801 (95%), Gaps = 19/1801 (1%)
Strand=Plus/Plus
Query 59 AAAATCTCATCAATGGCGCTACGAACACTCTCAACGTTTCCTTCTCTTCCTCGTCGCTAC 118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 87 AAAATCTCAGCAATGGCGCTACGAACACTCTCAACGTTTCCTTCTCTTCCTCGTCGCCAC 146
Query 119 AC-A--ACGAGACGTGAACCCAATCTCACCGTCATTTACCGAAATCCAG-CAACGTCAAT 174
|| | ||||||||||||||||||||||||||||||||||| ||||| | | || |||||
Sbjct 147 ACAACGACGAGACGTGAACCCAATCTCACCGTCATTTACCGTAATCC-GACGACATCAAT 205
Query 175 CGTCTGCAAATCAATCGCTAATTCCGAACAACCAGTTTCACTCTCAGAACGAGATGGATT 234
|||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 206 CGTCTGTAAATCAATAGCTAATTCAGAACCACCAGTTTCACTCTCGGAACGAGATGGATT 265
Query 235 CGCGGCGGCTGCTCCAACCCCTGGAGAGAGGTTCTTGGAGCACCAACGAGCTCACgaagc 294
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||
Sbjct 266 TGCGGCGGCTGCTCCAACCCCTGGAGAAAGGTTCCTGGAGAACCAACGAGCTCATGAAGC 325
Query 295 tcagaaagtagtgaagaaagagctcaaaaaagaaaagaagaaaaagaaagaGGAGATTAT 354
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 326 TCAGAAAGTAGTGAAGAAAGAGATCAAAAAGGAGAAGAAGAAAAAGAAAGAGGAGATTAT 385
Query 355 TGTACGGAAAGTTGTTGATACCTCAATCTCATGTTGTTACGGCTGCGGTGCTCCGTTACA 414
|| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 386 TGCACGGAAAGTTGTTGATACCTCAGTCTCATGTTGTTACGGCTGCGGAGCTCCGTTACA 445
Query 415 AACTTCCGACGTCGATTCTCCGGGATTTGTCGATTTAGTTACTTACGAATTGAAGAAGAA 474
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 446 AACTTCCGACGTCGATTCTCCGGGATTTGTCGATTTGGTTACTTATGAATTGAAGAAGAA 505
Query 475 ACATCACCAATTAAGAACTATGATATGTGGAAGATGTCAGCTATTGTCTCATGGACATAT 534
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 GCATCACCAGTTAAGAACTATGATATGTGGAAGATGTCAGCTATTGTCACATGGACATAT 565
Query 535 GATTACAGCAGTTGGTGGTAATGGAGGATATCCAGGTGGGAAACAATTTGTATCAGCTGA 594
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 566 GATTACAGCAGTTGGTGGTAATGGAGGTTATCCAGGTGGGAAACAATTTGTATCAGCTGA 625
Query 595 TGAACTTCGTGAGAAGCTTTCTCATTTACGCCATGAGAAAGCTTTGATTGTTAAATTGGT 654
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TGAACTTCGTGAGAAACTTTCTCATTTACGCCATGAGAAAGCTTTGATTGTTAAATTGGT 685
Query 655 TGATATTGTGGATTTTCATGGAAGCTTTTTAGCTCGTGTTCGTGACTTAGTTGGAGCTAA 714
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 686 TGATATAGTGGATTTTAATGGAAGCTTTTTAGCTCGTGTTCGTGATTTAGTTGGAGCTAA 745
Query 715 TCCGATTATACTAGTTATAACTAAGATTGATCTTCTTCCGAAAGGAACAGATATGAATTG 774
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 746 TCCGATTATACTTGTTATAACTAAGATTGATCTTCTTCCAAAAGGAACGGATATGAATTG 805
Query 775 TATTGGGGATTGGGTCGTAGAAGTGACCATGAGGAAAAAGCTTAATGTCTTGAGTGTCCA 834
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TATCGGGGATTGGGTTGTGGAAGTGACCATGAGGAAAAAGCTTAATGTCTTGAGTGTCCA 865
Query 835 TCTCACAAGCTCGAAGTCTCTGGATGGAGTTAGCGGAGTTGCATCAGAAATCCAGAAGGA 894
||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 866 TCTCACAAGTTCAAAGTCCCTGGATGGAGTTAGCGGAGTTGCATCAGAGATCCAGAAGGA 925
Query 895 GAAAAAGGGACGAGATGTCTACATTCTGGGTGCAGCTAACGTAGGGAAGTCAGCATTCAT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GAAAAAGGGACGAGATGTCTACATTCTGGGTGCAGCTAACGTAGGGAAGTCAGCATTCAT 985
Query 955 CAATGCTTTGCTGAAAACGATGGCCGAAAGGGATCCTGTTGCAGCAGCGGCACAAAAGTA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CAATGCTTTGCTGAAAACGATGGCCGAAAGGGATCCTGTTGCAGCAGCGGCACAAAAGTA 1045
Query 1015 CAAACCAATTCAATCTGCTGTCCCTGGAACCACTTTGGGTCCAATTCAGATCAACGCCTT 1074
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1046 CAAACCAATTCAATCTGCTGTCCCTGGAACCACCTTGGGTCCAATTCAGATCAACGCTTT 1105
Query 1075 CCTCGGAGGAGAGAAGTTGTATGATACACCGGGTGTGCACCTACACCACAGGCAAGCAGC 1134
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1106 CGTCGGAGGAGAGAAGTTGTATGACACACCGGGTGTGCACCTACACCACAGGCAAGCAGC 1165
Query 1135 TGTCGTTCATTCAGATGATTTACCCGCCCTTGCTCCTCAAAATCGGCTTAGAGGCCAGTC 1194
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1166 TGTCGTTCATTCAGATGATTTACCCGCCCTTGCTCCTCAAAATCGTCTCAGAGGCCAATC 1225
Query 1195 TTTCGATATTTCAACTTTGCCAACTCAATCGTCAAGTAGTCCCAAGGGGGAGAGTTTAAA 1254
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1226 TTTCGATATTTCAACTTTGCCAACTCAATCGTCAAGTAGTCCCAAGGGTGAGAGCTTAAA 1285
Query 1255 CGGTTATACATTTTTCTGGGGAGGTCTCGTTAGGATTGACATCTTGAAGGCTCTACCGGA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 CGGTTATACATTTTTCTGGGGAGGTCTCGTTAGGATTGACATCTTGAAGGCTCTACCGGA 1345
Query 1315 AACATGTTTCACATTCTATGGACCAAAGGCTCTTGATATTCATGTAGTACCAACCAAAAC 1374
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1346 AACATGTTTCACATTCTATGGACCAAAAGCTCTTGAGATTCATGCAGTACCAACCAAAAC 1405
Query 1375 AGCTACTGCATTTTACGAGA-AAGAACTGGGTGTGCTTCTGACACCTCCATCAGGGAAAG 1433
||| ||||| ||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1406 AGCGACTGCCTTTTACGAGGCAA-AACTGGGTGTGCTTCTAACACCTCCATCAGGGAAAA 1464
Query 1434 ATCAGATGCAGGAGTGGAAAGGGTTACAATCTCACCGATTACTCCAGATCGAAATCAACG 1493
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1465 ATCAGATGCAGGAGTGGAAAGGGTTACAATCTCACCGGTTACTTCAAATCGAAATCAACG 1524
Query 1494 ATGCAAAAAGACCGGCTAGTGATGTGGCGATATCTGGGTTAGGATGGATTTCAATTGAAC 1553
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1525 ATGCAAAAAGACCGGCTAGTGATGTGGCAATATCAGGGTTAGGATGGATTTCAATTGAAC 1584
Query 1554 CAATCCGCAAAACACGAGGAACTGAACCGCGAGATCTCAATGAAGCAGAGCATGAGATAC 1613
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1585 CAATCCGCAAAACACGAGGAACTGAACCGAGAGATCTCAATGAAGCAGAGCATGAGATAC 1644
Query 1614 GTCTTTGTGTCAGTGTGCCTAAACCAGTTGAAGTGTTTCTCCGACCAACATTGCCAATTG 1673
| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1645 ATATTTGTGTCAGTGTGCCAAAACCAGTTGAAGTTTTTCTTCGACCAACATTGCCAATTG 1704
Query 1674 GTACTTCAGGTACTGAATGGTATCAGTATCGTGAGTTAACCGATAAGGAAGAAGAAGTAC 1733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 GTACTTCAGGTACTGAATGGTATCAGTATCGTGAGTTAACCGATAAGGAAGAAGAAGTAA 1764
Query 1734 GACCCAAATGGTACTTTTGAATTTTT----GTTTAGATGCAAAAGTATCGGCTAAGCT-T 1788
|||||||||||||||||||||||||| |||||||||||||| |||||||| || | |
Sbjct 1765 GACCCAAATGGTACTTTTGAATTTTTTTTTGTTTAGATGCAAAAATATCGGCTTAG-TAT 1823
Query 1789 CTCAAACCAGAGTTATACTAAAGTAATGCAAAATAGAAAATTGTTTGTAATGCAATTTAC 1848
| ||||||||||||||| | |||| |||||||| ||||||||||||||| ||| |||
Sbjct 1824 CACAAACCAGAGTTATA-T---GTAA--CAAAATAGTAAATTGTTTGTAATGAAATCTAC 1877
Query 1849 T 1849
|
Sbjct 1878 T 1878
Score = 87.9 bits (47), Expect = 3e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 1 CTCTGTATCAGCTAGAGTCTCTCTTGTTCTCTCTCTGGGTTTAATAGA-AG-ATAACAAC 58
||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 8 CTCTGTACCAGTTAGAGTCTCTCTTGTTCTCTCTCTGGGTTTAATAGATAACATAACAAC 67
Query 59 AAA 61
|||
Sbjct 68 AAA 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91515593535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5