BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485112
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophy... 1653 0.0
> AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein
complex I subunit A4 | chr3:17493372-17495033 REVERSE
LENGTH=1266
Length=1266
Score = 1653 bits (895), Expect = 0.0
Identities = 998/1046 (95%), Gaps = 13/1046 (1%)
Strand=Plus/Plus
Query 1 AACCGATAAGCCTGTATCTCCCT-TCAAACCCATCTCATCCGTCAAATCAACCATGTCAT 59
||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| |||||
Sbjct 1 AACCGATAAGCCTGTATCT-CCTCTCAAACCAATCTCCTCCGTCAAATCAACCACGTCAT 59
Query 60 CTAATCCAACGGTAGATACTCA-TCCATCAAACCACAGCCACAAAACTCATTTCAACAAA 118
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||
Sbjct 60 CTAATCCAACGGTAGATACTCAGT-CATCAAACCACAGCCACAAAACTCGTTTCAAGAAA 118
Query 119 CGAATAAACGTACAAAATCCCCCTCAAAGTCTTATTTCTTCACAATCATCTCTGAACTTC 178
||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 119 CGAATAAACTTACAAAAT-CCCCTCCAAGTCTTATTTCTTCACAACCATCTCTGAAC-TC 176
Query 179 ATCTCTCTATCTCTCTTGATTCCAATCCATTCTTCTTAC-AGTGCCGGGTTCTCGGGTCG 237
|||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 177 ATCTTTCAATCTCTCTTGATTCCAATCCATTCTTCTT-CAAGTGCCGGGTTCTCGGGTCG 235
Query 238 GATCTTCTAAGTCTAGCTAGGGATAATGGCGACTGTCACTACTCATGCCTCGGCCTCGAT 297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 236 GATCTTCTAAGTCTAGCTAGGGATAATGGCTACTGTCACTACTCATGCCTCGGCCTCGAT 295
Query 298 TTTCCGACCTTGTACTACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAA 357
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTTCCGACCTTG---TACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAA 352
Query 358 CCGCGACTTGTCGTTTAAATCAATCGGTTCATCGTCCAAAACGTCGTCGTTCAAGGTTGA 417
||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 353 CCGCGACTTGTCGTTTACATCGATCGGTTCATCGGCCAAAACGTCGTCGTTCAAGGTTGA 412
Query 418 GGCTAAGAAAGGACAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCT 477
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGCTAAGAAAGGAGAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCT 472
Query 478 TGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATG 532
Query 538 GTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCCATGCTCGGTGTCGCTGGGATGCT 597
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 533 GTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCTATGCTCGGTGTCGCTGGGATGCT 592
Query 598 TTTGCCGGAAGTTTTCACCAAGCTCGGAATCATAAACGTTCCGGAGTGGTACGATGCTGG 657
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 593 TTTGCCGGAAGTTTTCACCAAGATCGGAATCATAAATGTTCCTGAGTGGTACGATGCTGG 652
Query 658 GAAAGAGCAGTACTTTGCATCATCTTCGACATTGTTCGTGATCGAATTCATATTGTTTCA 717
|||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 653 GAAAGAGCAGTATTTTGCATCGTCGTCGACATTGTTCGTGATCGAGTTCATATTGTTTCA 712
Query 718 TTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCC 772
Query 778 TATCTTCAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAA 837
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TATCTTTAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAA 832
Query 838 CCCGCTTAACTTTGCTCCTACGCTCGAGGCCAAGGAGAAAGAAATCGCAAACGGGAGATT 897
||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||
Sbjct 833 CCCGCTTAACTTTGCTCCTACGCAAGAGGCCAAGGAGAAAGAGCTAGCAAACGGGAGGTT 892
Query 898 GGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAGGGACCATT 957
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 893 GGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAAGGACCATT 952
Query 958 TGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAACTCT-CA 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 953 TGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAAC-CTTCA 1011
Query 1017 ACTAAAGAGTTAAGAGGGACTTATGA 1042
|||||||||| |||| |||||||||
Sbjct 1012 ACTAAAGAGTGAAGACAGACTTATGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5