BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485116

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47510.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   525    1e-148


> AT3G47510.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant 
structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast 
hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:17511079-17511858 
FORWARD LENGTH=595
Length=595

 Score =  525 bits (284),  Expect = 1e-148
 Identities = 424/487 (87%), Gaps = 28/487 (6%)
 Strand=Plus/Plus

Query  42   TAGTCAAATGGCCAACAAAGCTCTCATCCATCTCCTCGTGATCTTCTTCTTGTCCCTATC  101
            |||||||||||| |||||||||||||| ||||||||||| |||||||||||| | |||||
Sbjct  88   TAGTCAAATGGCTAACAAAGCTCTCATTCATCTCCTCGTCATCTTCTTCTTGGCTCTATC  147

Query  102  ACACATCTTCTTCTTCCCTTCCAATGCATCGAGACTTGGGAGTTTGATGGAAAAGCCCAA  161
            |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||
Sbjct  148  ACACATCTTCTTCTTCCCTTCCCATGCTTCGAGACTTGGGAGTTTGATGGAGAAGCCAAA  207

Query  162  AATTGATCTACCTCCACAAGATACACTAATGGA-G-GTAG-A--A-G--GAAG---GG-T  209
            ||||| || ||||| |||||||||||||||||| | | || |  | |  ||||   || |
Sbjct  208  AATTGTTCGACCTCAACAAGATACACTAATGGATGTGAAGAAGGAGGTCGAAGAAAGGAT  267

Query  210  GGTGATGGAGTTAAACGACTATCCAGGTTCGGGTGCCAACAATCGCCACTTGCCACGACA  269
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  268  GGTGATGGAGTTAAACGACTATCCAGGTTCGGGTGCAAACAATCGCCATTTGCCACGACA  327

Query  270  ACGAGGCTGCGTCATCGATTGCTGATAGATATATAATGTGAAGAAAAATTAATTAATATA  329
            ||||||||||||| | |||||||||| |||||||||  ||| ||||||  ||||||||| 
Sbjct  328  ACGAGGCTGCGTCGTTGATTGCTGATCGATATATAAAATGACGAAAAACGAATTAATATG  387

Query  330  TATTAT-G---GTATCGATAAAATTTGATGTATAAGTA-GCTACTTCTAATTATTATTAC  384
             ||||| |   ||||||||||| || |||||||||||| | ||| |||||||||| || |
Sbjct  388  -ATTATAGCTAGTATCGATAAA-TT-GATGTATAAGTAAGATACGTCTAATTATTTTT-C  443

Query  385  GGACTATGAATTGAGTTAGTTTAACATCGGAG---A----CGATTAGACTATATACTTGT  437
             || ||||||||||||||||||||||| ||||   |    ||||||||||||||||||||
Sbjct  444  AGAATATGAATTGAGTTAGTTTAACATTGGAGTCTATAGACGATTAGACTATATACTTGT  503

Query  438  CTACTCTAGGGAGAAAAGCATAGTTTTATTTATGTAGTTCAGTTATTAAATCCAGAGATG  497
            |||||||| |||||||||||||||||||||||||||||||||||  |||||| | |||||
Sbjct  504  CTACTCTACGGAGAAAAGCATAGTTTTATTTATGTAGTTCAGTTGGTAAATCAATAGATG  563

Query  498  CTATTGT  504
            |||||||
Sbjct  564  CTATTGT  570


 Score = 69.4 bits (37),  Expect = 3e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  1   aaaaaaaGAAACAAAACTCACAACAACATCAAGGTTTTAACTA  43
           ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  16  AAAAAGAGAGACAAAACTCACAACAACATCAAGGTTTTAACTA  58



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5