BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485117
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47530.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2953 0.0
> AT3G47530.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:17517355-17519165 REVERSE LENGTH=1811
Length=1811
Score = 2953 bits (1599), Expect = 0.0
Identities = 1743/1813 (96%), Gaps = 8/1813 (0%)
Strand=Plus/Plus
Query 1 AAGACTATGTTGAAGTCCATAAGCAGCAGCAGCAGCGACGATCACCTTCTTTCTCTGATC 60
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 3 AAGACTATGTTGAAGTCCATAAGCAGCAGCAGCGGCGACGATCATCTTCTTTCTCTGATC 62
Query 61 GTATCTTCCACCGGAAAACTCCATCTCCGGCAGATTCACGCCGTCTTACTCCGCACTTCC 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 GTATCTTCCACCGGAAAACTCCATCTCCGGCAGATTCACGCCCTCTTACTCCGCACTTCC 122
Query 121 TTAATCAGAAACTCCGACGTTTTCCACCATTTCctctctcgtctcgctctctctctcATT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 123 TTAATCAGAAACTCTGACGTTTTCCACCATTTCCTCTCTCGTCTCGCTCTCTCTCTGATT 182
Query 181 CCTCGAGACATCAATTACTCATGCCGAGTTTTCTCCCAGAGATTGAACCCAACTCTCTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCTCGAGACATCAATTACTCATGCCGAGTTTTCTCCCAGAGATTGAACCCAACTCTCTCT 242
Query 241 CACTGCAACACCATGATCAGAGCTTTCTCTCTCAGCCAAACTCCATGCGAAGGGTTTCGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CACTGCAACACCATGATCAGAGCTTTCTCTCTCAGCCAAACTCCATGCGAAGGGTTTCGC 302
Query 301 TTGTTTCG-TGCTCTTAGACGAAACATCTCTTTTCCTGCTAATCCACTCTCGTCTTCTTT 359
|||||||| | ||||| ||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 303 TTGTTTCGAT-CTCTTCGACGAAACAGCTCTCTTCCTGCTAATCCGCTCTCGTCTTCTTT 361
Query 360 TGCTCTCAAGTGTTGTATCAAATCAGGTGACTTACTCGGTGGTTTGCAGATTCACGGGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 TGCTCTCAAGTGTTGTATCAAATCAGGTGACTTACTCGGTGGTTTGCAGATTCACGGCAA 421
Query 420 GATTTTCAGTGATGGGTTTCTCTCGGATAGTCTTCTTATGACGACTCTGATGGATCTTTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GATTTTCAGTGATGGGTTTCTCTCGGATAGTCTTCTTATGACGACTCTGATGGATCTTTA 481
Query 480 CTCAACTTGTGATAACAGTACTGATGCATGTAAAGTGTTCGACGAAATTCCCCAA-AGAG 538
||| ||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 482 CTCCACTTGCGAAAACAGTACTGATGCATGTAAAGTGTTCGACGAAATT-CCCAAGAGAG 540
Query 539 ATACTGTTTCGTGGAACGTGTTGATTTCGTGTTATCTCCGGAACAAACGTACGAGAGATG 598
|||||||||| ||||| ||| || ||||||||||||| ||||| ||||||||||||||||
Sbjct 541 ATACTGTTTCTTGGAATGTGCTGTTTTCGTGTTATCTGCGGAATAAACGTACGAGAGATG 600
Query 599 TTTTGGTTTTGTTTGATAAGATGAAGAACGATGTCGATGGGTGTGTAAGACCAGACAATG 658
|||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 601 TTTTAGTTTTGTTTGATAAGATGAAGAACGATGTCGATGGTTGTGTAAAACCAGATGGTG 660
Query 659 TAACATGCTTGTTAGCTTTACAAGCTTGCGCTAACTTGGGGGCGTTGGATTTTGGTAAAC 718
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 TAACATGTTTGTTAGCTTTACAAGCTTGTGCTAACTTGGGGGCGTTGGATTTTGGTAAAC 720
Query 719 AAGTTCATGACTTTATCGATGAAAACGGACTCAGTGGTGCTTTGAATTTGAGTAACACTT 778
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 AAGTTCATGACTTTATCGATGAAAATGGACTCAGTGGTGCTTTGAATTTGAGTAACACTC 780
Query 779 TGGTTTCAATGTACTCACGTTGCGGGTCTATGGATAAAGCTTACGAAGT-TTTTAATCGA 837
||||||||||||||||||||||||||||||||||||| |||||| |||| |||| || ||
Sbjct 781 TGGTTTCAATGTACTCACGTTGCGGGTCTATGGATAAGGCTTACCAAGTATTTT-ATGGA 839
Query 838 ATGCATGAAAGAAACGTTGTCTCATGGACGGCTATGATCTCGGGTTTAGCCATGAATGGG 897
|||| |||||||||||| ||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 840 ATGCGTGAAAGAAACGTAGTCTCGTGGACGGCTCTGATCTCGGGTTTAGCTATGAATGGG 899
Query 898 TTTGGAAAAGAAGCCATTGAAGCTTTCAACGAAATGTTGAAGTTTGGAATCTCTCCAGAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTGGAAAAGAAGCCATTGAAGCTTTCAACGAAATGTTGAAGTTTGGAATCTCTCCAGAG 959
Query 958 GAACAGACACTCACGGGTTTATTGTCTGCCTGTAGCCATTCCGGGCTGGTCGATGAAGGA 1017
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 GAACAGACACTCACTGGTTTATTGTCTGCCTGTAGCCATTCCGGGCTGGTCGCTGAAGGA 1019
Query 1018 ATGATATTTTTCGATAGAATGAGGAGCGGTGAATTTAAGATAAAGCCAAATTTACATCAC 1077
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1020 ATGATGTTTTTCGATAGAATGAGGAGTGGTGAATTTAAGATAAAGCCAAATTTACATCAC 1079
Query 1078 TATGGCTGCATCGTTGACCTCTTGGGACGTGCTCGACTACTTGATAAAGCTTACAGTCTC 1137
||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1080 TATGGCTGCGTTGTTGACCTCTTGGGACGTGCTCGTCTACTTGATAAAGCTTACAGTCTC 1139
Query 1138 ATTAAGTCAATGGAGATGAAACCGGACTCCACCATTTGGCGTACGCTGCTCGGGGCTTGT 1197
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1140 ATTAAGTCAATGGAGATGAAACCGGACTCAACCATTTGGCGTACGCTTCTCGGGGCTTGT 1199
Query 1198 AGAGTCCATGGAAATGTGGAACTTGGGGAACGTGTGATCTCTCATCTTATCGAACTCAAA 1257
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1200 AGAGTCCATGGAGATGTGGAACTTGGGGAACGTGTGATCTCTCATCTCATCGAACTCAAA 1259
Query 1258 GCCGAAGAAGCTGGAGATTACGTTCTGTTACTCAACACATACT-CATCGGTTGGGAAATG 1316
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1260 GCCGAAGAAGCTGGAGATTACGTTCTGTTACTCAACACATACTCCA-CGGTTGGGAAATG 1318
Query 1317 GGAGAAAGTAACTGAATTGCGTTCTTTAATGAAGGAGAAAAGAATCCAGACCAAACCCGG 1376
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1319 GGAGAAAGTGACTGAATTGCGTTCTTTAATGAAGGAGAAAAGAATCCATACTAAACCTGG 1378
Query 1377 ATGCAGCGCAATCGAGCTACAAGGAACCGTTCATGAGTTTATAGTAGACGATGTTTCGCA 1436
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATGCAGCGCGATCGAGCTACAAGGAACCGTTCATGAGTTTATAGTAGACGATGTTTCGCA 1438
Query 1437 TCCGCGGAAGGAAGAAATCTACAAAATGCTGGCGGAAATCAATCAGCAGCTGAAGATTGC 1496
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCCGCGGAAGGAAGAAATCTATAAAATGCTGGCGGAAATCAATCAGCAGCTGAAGATTGC 1498
Query 1497 GGGTTATGTGGCGGAAATCACATCGGAACTGCACAATCTTGATTCAGAAGAAGAAAAGGG 1556
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1499 GGGGTATGTGGCGGAAATTACATCGGAACTGCACAATCTTGAGTCAGAAGAAGAAAAGGG 1558
Query 1557 ATACGCGTTGAGATACCATAGCGAGAAGCTAGCTATAGCCTTTGGGATTCTGGTGACTCC 1616
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATACGCGTTAAGATACCATAGCGAGAAGCTAGCTATAGCCTTTGGGATTCTGGTGACTCC 1618
Query 1617 ACCAGGAACAACCATTAGAGTGACCAAGAATCTCAGAACTTGTGTTGATTGTCATAATTT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACCAGGAACAACCATTAGAGTGACCAAGAATCTCAGAACTTGTGTTGATTGTCATAATTT 1678
Query 1677 TGCAAAGTTTGTATCTGATGTTTATGATCGTGTCGTGATTGTTAGAGACCGTTCCCGATT 1736
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 1679 TGCAAAGTTTGTATCTGATGTTTATGATCGTATCGTGATCGTTAGAGACCGTTCCAGATT 1738
Query 1737 TCATCATTTTAAAGGCGGCTCTTGCTCTTGTAATGACTTTTGGTGATAATTCAAGCTGAT 1796
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1739 TCATCATTTTAAAGGCGGCTCTTGCTCTTGTAATGACTTTTGGTGATGATTCAAGCTGAT 1798
Query 1797 AACATTTTTCTTC 1809
|||||||||||||
Sbjct 1799 AACATTTTTCTTC 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5