BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485118
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521... 952 0.0
AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081... 359 3e-98
AT2G43580.1 | Symbols: | Chitinase family protein | chr2:18078... 255 3e-67
> AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521029-17522624
FORWARD LENGTH=1024
Length=1024
Score = 952 bits (515), Expect = 0.0
Identities = 601/642 (94%), Gaps = 7/642 (1%)
Strand=Plus/Plus
Query 1 CACAAACAACAAAACATGGCTTTCACAAAAATTGT-CTCAGTCATTTTCCTTTGCCTCTT 59
||||||||||| |||||||||| ||| |||||| | || |||| |||||||||||||| |
Sbjct 1 CACAAACAACATAACATGGCTTCCACCAAAATT-TCCTTAGTCTTTTTCCTTTGCCTCGT 59
Query 60 AGGTCCTTGTATAGGTGTTGGAACCACTAGCTCTGGTGGATCAGTCAGTAGCATTGTGAC 119
||||||||||||||| | ||||||||| ||| ||| | |||||||||||||||||||||
Sbjct 60 AGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGAC 119
Query 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGATT 179
Query 180 -ATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGTTCCG 238
| ||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 180 CA-ACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGCAAGTTCCG 238
Query 239 TTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCACTTCT 298
|||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 239 TTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTCT 298
Query 299 GCTACATAGAAGAAACAAAGAAAAAGTCACGTGGCAGGTGCGACGAGAACGTAGAGCAAA 358
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 299 GCTACATAGAAGAAATAAAGAAAAGGTCACGTGGTAGGTGCGACGAGAACGTAGAGCAGA 358
Query 359 GACCATGTCCATCGCCGAGAAAAGGTCACTCCGGTCGTGGTCA---GAGCCTCGGTCTCG 415
||||||||||||| | ||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct 359 GACCATGTCCATCACAGAGTAAAGGTCACTCCGGTCGTGGTCATCAGAGTCTCGGTCTCG 418
Query 416 ACCTTCTAAGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCACGAAGGGTT 475
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 ACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGTAGCTTTCAGGAAGGGTT 478
Query 476 TGTCGTTTTGGATTAATAGCGTAAGGCCGGTACTGAACCAAGGATTTGGAGCCACTATAA 535
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGGATTTGGAGCCACTATAA 538
Query 536 GAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCTGTCAACGCAAGGATTG 595
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 539 GAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGCGGTCAAGGCAAGGATTG 598
Query 596 GGTACTATAGAGACTATTGTAGACAACTTGGTGTGGATCCTG 637
||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 GGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTG 640
> AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081331-18082767
REVERSE LENGTH=1074
Length=1074
Score = 359 bits (194), Expect = 3e-98
Identities = 242/266 (91%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 395 GTGGTCAGAGCCTCGGTCTCGACCTTCTAAGCCAGCCTGAGCTTGTGGGTAGCAACCCAA 454
||||||| || |||||||| ||||||||| ||||||| || |||||||||||||||||||
Sbjct 551 GTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGTAGCAACCCAA 610
Query 455 CTGTAGCTTTCACGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTACTGAACC 514
|||||||||||| || |||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 611 CTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCGGTTCTGAACC 670
Query 515 AAGGATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAG 574
|||| ||||||||||| || ||||| || ||||| ||||||||||||||||| ||||| |
Sbjct 671 AAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGTGGTAATTCCG 730
Query 575 GTGCTGTCAACGCAAGGATTGGGTACTATAGAGACTATTGTAGACAACTTGGTGTGGATC 634
|||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
Sbjct 731 GTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACC 790
Query 635 CTGGTCCTAACCTTAGTTGCTAAAAA 660
||||||||||||||||||||||||||
Sbjct 791 CTGGTCCTAACCTTAGTTGCTAAAAA 816
Score = 285 bits (154), Expect = 4e-76
Identities = 221/253 (87%), Gaps = 5/253 (2%)
Strand=Plus/Plus
Query 60 AGGTCCTTGTATAGGT-GTTGGAACCACTAGCTCTGGTGGATCAGTCAGTAGCATTGTGA 118
||||||||||| |||| | ||||||| | | | | || || || ||| ||||||||||||
Sbjct 180 AGGTCCTTGTAGAGGTAG-TGGAACCCCGA-C-C-GGAGGGTCGGTCGGTAGCATTGTGA 235
Query 119 CACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAAAGAT 178
||||||||||||||||||| |||||||||||||| |||||||| ||| || | |||||||
Sbjct 236 CACAAGGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGAT 295
Query 179 TATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGTTCCG 238
| |||||||| ||||||||| || |||| ||||||| ||| ||||||||||| | ||| |
Sbjct 296 TCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTG 355
Query 239 TTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCACTTCT 298
|||| |||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 356 TTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCT 415
Query 299 GCTACATAGAAGA 311
|||||||||||||
Sbjct 416 GCTACATAGAAGA 428
> AT2G43580.1 | Symbols: | Chitinase family protein | chr2:18078649-18080028
REVERSE LENGTH=981
Length=981
Score = 255 bits (138), Expect = 3e-67
Identities = 203/235 (86%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 115 GTGACACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAGAAAA 174
||||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 232 GTGACACAAATTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGATGCGCGGGAAAA 291
Query 175 AGATTATACACCCGCGACTCTTTCATTGACGCTGCTAATAGTTTTCCCAACTTTGCTAGT 234
|| || |||||||| |||||||||||| |||| | |||| ||| |||| |||||||| |
Sbjct 292 AGTTTTTACACCCGGGACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAAT 351
Query 235 TCCGTTACTAGACGTGAAATTGCTACCATGTTTGCTCATGTCACTCACGAGACCGGCCAC 294
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||
Sbjct 352 ACCGTTACTAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACAC 411
Query 295 TTCTGCTACATAGAAGAAACAAA-GAAAAAGTCACGTGGCAGGTGCGACGAGAAC 348
||||||||||||||||| | ||| | |||||||| || ||||||| |||||
Sbjct 412 TTCTGCTACATAGAAGAGATAAACGGGGC-GTCACGTGTCATGTGCGACCAGAAC 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38177951720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5