BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485125
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47610.1 | Symbols: | transcription regulators;zinc ion bin... 2331 0.0
> AT3G47610.1 | Symbols: | transcription regulators;zinc ion binding
| chr3:17549121-17551420 FORWARD LENGTH=1500
Length=1500
Score = 2331 bits (1262), Expect = 0.0
Identities = 1423/1500 (95%), Gaps = 14/1500 (1%)
Strand=Plus/Plus
Query 1 CTTGTGGTCGTTTCGAAGAGACTAAAGGCGAC-G-GAGAATCGGAGAAGAAGATGGGAAC 58
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 6 CTTGTCGTCGTTTCGAAGAGACTAAAGGCGACGGAGAGAATCGGAGAAGAAGATGGGAAC 65
Query 59 GGCGGTGGGACAGTGGCTAGAAGAAGCGCTGGTTG-CTCTCTGCCGGAAACCAGAGACCG 117
||||||||||||||||||||| |||||||| |||| | |||||||| |||||||||||||
Sbjct 66 GGCGGTGGGACAGTGGCTAGAGGAAGCGCTTGTTGAC-CTCTGCCGCAAACCAGAGACCG 124
Query 118 GTTTGAATTTTGATCGTGATGTCATCTCCGGTTTAGTCTCCTATTGCGATCTTGCTCAGC 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GTTTGAATTTCGATCGTGATGTCATCTCCGGTTTAGTCTCCTATTGCGATCTTGCTCAGC 184
Query 178 CTGTCGATGCCAAGGAATATCTCGACAATATTATTGGGAAAGAAGGCAAAACCATCATTG 237
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 185 CTGTCGATGCCAAGGAATATCTCGACAATATTATTGGAAAAGAAGGCAAAAGCATCATTG 244
Query 238 CAGAATATCTACAGCGAAGAGGATACAAAGATCCATCTAGCCATGTAGCAAACAGTTCAG 297
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 245 CAGAATATCTACAGCGAAGAGGATACAAAGATCCATCTAGCCATGTAGCAGCCAGTTCAG 304
Query 298 GTCCAGAACTGCAGATGTATGTTAAGCCAAAAGTGGATAATGGTGCTTCTAGTGGAACCA 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTCCAGAACTGCAAATGTATGTTAAGCCAAAAGTGGATAATGGTGCTTCTAGTGGAACCA 364
Query 358 AGAAACCGTTTAAAACACCAAAAGAGGGAACATCTTCTAATCAGCAAGCTGGAACTGGGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AGAAACCGTTTAAAACACCAAAAGAGGGAACATCTTCTAATCAGCAAGCTGGAACTGGGA 424
Query 418 AAGTGACAGCTCCGGCCCAGCAAGTCAATCCTaaaaagaaaaaaGGTGGAAAAGTGATTT 477
|| | |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 425 AATTAACAGCTCCCGCCCAGCAAGTTAATCCTAAGAAGAAAAAAGGTGGAAAGGTGATTT 484
Query 478 CTCTTGCAGAAGCAGCTAAAGGATCAATAGTGTTTCAGCAAGGAAAACCATGTGCATGTC 537
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 485 CTCTTGCCGAAGCAGCTAAAGGATCAATAGTGTTTCAGCAAGGAAAACCGTGTGCATGCC 544
Query 538 AAGCTCGTAGACACAAATTAGTGAGCAACTGCTTGTCGTGTGGGAAAATAGTGTGTGAAC 597
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 545 AAGCTCGTAGACACCACTTAGTGAGCAACTGCTTGTCGTGTGGGAAAATAGTGTGCGAAC 604
Query 598 AAGAAGGAGAAGGGCCTTGCAGTTTCTGCGGAGCACTTGTGCTAAAAGAAAGCAGTACAT 657
||||||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||
Sbjct 605 AAGAAGGAGAAGGGCCTTGCAGTTTTTGCGGAGCACTTGTGCTGAAAGAAGGAAGTACAT 664
Query 658 ATGCTGGGCTAGAGGAAGGGTATGCTCCAGTATCTGATGCTGATGTGGCAGCTGAAGCAT 717
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 665 ATGCTGGGCTAGAGGTAGGGTATACTCCAGTATCTGATGCTGATGTGGCAGCTGAAGCAT 724
Query 718 ATGCGAAAAGGCTTGTAGAGTATGATAGAAACTCAGCTGCACGTACAACAGTTATTGATG 777
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 725 ATGCGAAAAGGCTTGTAGAGTATGATAGAAATTCGGCCGCACGTACAACGGTTATTGATG 784
Query 778 ACCAGAGTGATTACTATGAAAGTGAGAGTAGTAGTTGGCTCTCTGCGGAGGAAAAAGAGC 837
|||| || |||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 785 ACCAAAGCGATTACTATGAATCTGAGAGCAGTACTTGGCTCTCTGCGGAGGAAAAAGAGC 844
Query 838 TCGTGAGGAAGAAGCGAGAGGAGATTGAAGAAGCTGAACGAGTCAAAAAGAGCAAAGTGG 897
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 845 TAGTGAGGAAGAAGCGAGAGGAGATTGAAGAAGCTGAACGAGTAAAAAAGAGCAAAGTGG 904
Query 898 TTATGACATTTGATTTAGTCGGTCGTAAGGTTCTGTTAAATGAAGATGATATCTCAGAAC 957
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 905 TTATGACATTTGATTTAATCGGCCGTAAGGTTCTGTTAAATGAAGATGATATCTCAGAAC 964
Query 958 TAGAATCAGGGAACAGGATTCTTGGACCACCTGAGACTAAAAACGTGAACAGAATAAAAC 1017
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 965 TAGAATCAGGGAACAGGATTCTGGGACCACCTGAGACTAAAAACGTGAACAGAATAAAAC 1024
Query 1018 CGAACCCGACTGCAAAACTCGTTCCAATCTTCTTAGACCCGGGACCAACCGAGAAGAAGC 1077
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1025 CGAACCCGACTGCAAGACTCGTTCCAATCTTCTTAGACCCAGGACCAACCGAGAAGAAGC 1084
Query 1078 CAAACAGCACCACCACCAAGAAAGACAACaaaaaaaaCCGAAACGGATTGTGTCTAGAGA 1137
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1085 CAAACAGCACCACCACCAAGAAAGACAACAAGAAAAACCGAAACGGTTTGTGTCTAGAGA 1144
Query 1138 TCACAGGAAGGGTACAACATGACAGAAGTGAACTCAAGTACTTACAAGCCGATCCAAAAT 1197
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1145 TCACAGGAAGGGTGCAACATGACAGAAGTGAACTCAAATACTTACAAGCCGATCCAAAAT 1204
Query 1198 CGGACGGTAAATCTTGGCCATCAGGAAACGAAGGGCTTCATGTAGAAGATGGTGGTGAAT 1257
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1205 CGGACGGTAAATCTTGGCCATCAGGAAACGATGGACTTCATGTAGAAGATGGTGGTGAAT 1264
Query 1258 GTTCCTTAGATTACGACTGAAAT-TTTTTCAGTAACCAAACCCGGTTAAATGTTTCCGGT 1316
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 1265 GTTCCTTAGATTACGACT-AAATATTTTTCAGTAACCAAACCCGGTTCAATGTTTTCGGT 1323
Query 1317 TTACCGAACCGGATACTACTATTTGTTCAGTTTAAAAGTCAACAATTTTTCTCTAGTTGA 1376
|||||||||| ||||||| | || ||||||||||||||||||||| |||||||| |||||
Sbjct 1324 TTACCGAACCTGATACTA-T-TT-GTTCAGTTTAAAAGTCAACAACTTTTCTCTTGTTGA 1380
Query 1377 GTCCACGTCGGATTGTT----GATA-GCCGTCGGTCAAGAATCACGTGTTCGGAATTTTG 1431
||||||||||||| ||| |||| |||||||||||||||||||||||| |||| ||||
Sbjct 1381 GTCCACGTCGGATGGTTTTTTGATACGCCGTCGGTCAAGAATCACGTGTTTGGAACTTTG 1440
Query 1432 GGTTTCTCGTGTGCTTACGTGGCGTTATGTAATTGAGTAATGTTAAATTCTCTCGGTTTT 1491
||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1441 GGTCTCTCATGTGATTACGTGGCGTTATGTAATTGGGTAATGTTAAATTCTCTCGGTTTT 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5