BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485127
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47630.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Mitochond... 1679 0.0
> AT3G47630.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Mitochondrial
matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:17563046-17565429
REVERSE LENGTH=1339
Length=1339
Score = 1679 bits (909), Expect = 0.0
Identities = 1132/1236 (92%), Gaps = 30/1236 (2%)
Strand=Plus/Plus
Query 1 AAGCTTCTTCAATTGTCCTCTTAAATCAA-TAACACTTTCGAATTCCTCCTCTTTCTCTC 59
|||||||||||||| ||||||||||||| |||| ||| | |||||||||||| || ||
Sbjct 11 AAGCTTCTTCAATTCCCCTCTTAAATCAACTAACGCTTCCTAATTCCTCCTCTGGCT-TC 69
Query 60 -TT--TTTCCATGGTTTGGGAA-ATCAAATACGCA-TT-ACATTTAGTAAAAGGG-TACT 112
|| | ||| | ||| || || | | || || | || | || ||||| ||
Sbjct 70 GTTCCTCTCC-T-TTTTTCCAAGGTC---TGCCCAGTTGA-ATACATTACAAGGGTTA-- 121
Query 113 TTTTTG-GT-AATGGAAACTACTCAAAGAGATGAGCTTTCGAGCTTCTTAGGTGTTCTTC 170
|||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 122 TTTTTGTCTGAATGGAAACTACTCAAAAAGATGAGCTTTCGAGCTTCTTAAGTGTTCTTC 181
Query 171 CTCCTGTGGATTTCTGTTGTGTTTATGGTTCCACATTGCATCCAAATAACCAAGATAAGT 230
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 182 CTCCTGTGGATTTCTGTTGTGTTTATGGTTCAACATTGCACCCAAATAACCAAGATAAGT 241
Query 231 CTAAAATGGTGGACTATATCCTTGGAGTCTCTGATCCTATGCAATGGCACTCT-CTGAAT 289
|||| ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||
Sbjct 242 CTAAGATGGTGGACTATATCCTTGGAGTCTCTGATCCTATAAAATGGCATTCTGC-GAAT 300
Query 290 CTGAAAATGAATTCAGATCACTATGCTTCGTGGATGGTTCACCTTGGTGGAGCCAGGCTG 349
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 CTGAAAATGAATTCAGATCACTATGCTTCATGGATGGTTCACCTTGGTGGAGCTAGGCTG 360
Query 350 ATTACAAATGTTGCCCATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAATTGG 409
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ATTACAAATGTTGCCGATAAAGTAGGAGTTGGAGTTCACTTCAATCCGTTTGTCAACTGG 420
Query 410 AACGACAGGAAGCTCAAGTATGGGGTTGTTCGGATGCATGACCTAGTACAGGACATACTA 469
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 AACGACAGGAAGCTCAAGTATGGAGTTGTTCGGATGCATGACCTAGTACAGGACATACTG 480
Query 470 GACTGGAATAGATTCTACTTGAGTGGCCGTTTACAGAAACCGGTTCATATGCTTGTTGAT 529
|||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 481 GACTGGAAGAGGTTCTACTTGAGTGGCCGTTTACAAAAACCTGTTCATATGCTTGTTGAT 540
Query 530 AATCTGGACATAGAGGATGTGAATTCTGTTAATAAGAGAGCTGCAGTATCTGCTGCTCTT 589
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 541 AATCTGGACATAGAGGATGTGAATTCTGTTAATAAGAGAGCTGCAATATCTGCAGCTCTT 600
Query 590 CTTCTCTTACCATCAAAATTCACCGAGGAAGATCTATATGCCAAAATATGCAGCCTTTCT 649
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 CTTCTCTTGCCATCGAAATTCACCGAGGAAGATCTATACGCCAAAATATGCAGCCTTTCT 660
Query 650 TACATGGGAGACTTGCGCATGTTTTTTGCAGAGGACACTAATAAGGTGAACAAGATTGTA 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACATGGGAGACTTGCGCATGTTTTTTGCAGAGGACACTAATAAGGTGAACAAGATTGTG 720
Query 710 AAGGGACAATTTGATATTTTCCAGTCAATGTATAAGCCTTTTCTTAAAGAGTGCGAGACC 769
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 721 AAGGGACAATTTGATCTTTTCCAGTCGATGTATAAGCCTTTTCTTGAAGAGTGCGAGACC 780
Query 770 AAAAACTTATTGAGATTCTCATCTGCTGAAGCTAGTCACACTAAATTAGTGCAGGATTCT 829
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 781 AAAAACTTATTGAGATTCTCATCGGCTGAAGCTAGTCACACTAAATTAGTTCAGGATTCT 840
Query 830 AGCCTGTCAGCAACACGTTCTCTGGTCTCTTCTCTTCCCGCATCAGTGAGAAGCCTAATG 889
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 841 AGCCTTTCAGCAACACGTTCTCTGGTCTCTTCTCTTCCTGCATCAGTGAGAAGCCAAATG 900
Query 890 GGGAAGTCACTCGGGGAGAAGAAATTCGTGAGTGAGACAGGTAGAGTTATGGGAGAAGTT 949
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 901 GGGAAGTCACTCGGGGAGAAGAAATTCGTGAGCGAGACCGGTAGAGTTATGGGAGAAGTT 960
Query 950 TGTATAGGTTCGAGAGAAGAAGCAGCGAGATGTATGGGGAATGTAATGAAGCGAAGGGTA 1009
|||||| ||||||||||||||||||||| |||||||| ||| || |||| | ||||||||
Sbjct 961 TGTATAAGTTCGAGAGAAGAAGCAGCGAAATGTATGGAGAAAGTCATGAGGAGAAGGGTA 1020
Query 1010 ATGGTTTCAAGCGCAAGACAAGCTGTGTCTGGTTTCTTGGCTGCTGGAGCTATCAATGCA 1069
||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1021 ATGGTTTCAAGCGGAAGACAAGCTGTGTCTGGTTTCTTGGCTGCAGGAGCTATTAATGCA 1080
Query 1070 ACAATGTATCTTTCCCAAAAAATGCGTAAAGCTTGGAACTCTCGGGCATGAAGACTTTGC 1129
|||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 1081 ACAATGTATCTTTCCCAAAAAATGCGCAAAGCTTGGAACTCTCGTGCATGA---CTTTGC 1137
Query 1130 AAAAACTCCCTACGAAGGTTTAGATGAACAAGTTGAGGAAAGTTTCCAATAATTGATCAT 1189
||||||||| | ||| ||||||||||||||| || || |||| ||||| ||||||||
Sbjct 1138 CAAAACTCCCCATGAAAGTTTAGATGAACAAG--GA--AA-GTTTACAATAGTTGATCAT 1192
Query 1190 TCttttttttttttGTTTCTAAGTAACAAGTTTTTT 1225
|||||| |||| || |||||||||||||||||||||
Sbjct 1193 TCTTTTCTTTTCTT-TTTCTAAGTAACAAGTTTTTT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61294865445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5