BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485129
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-... 1459 0.0
> AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:17567597-17569315 FORWARD
LENGTH=1074
Length=1074
Score = 1459 bits (790), Expect = 0.0
Identities = 977/1062 (92%), Gaps = 34/1062 (3%)
Strand=Plus/Plus
Query 1 TTATTTCTTCTCCTCGTTTCGAATCCTAATTGTCTTCAATTTCCGACGAGATTCTCACCG 60
||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 27 TTATTTCTTCTACTCGTTTCGAATCCTAATCGTCTACAGTTTCCGACGAGATTCTCACCG 86
Query 61 GAGAAAGACAGGTGACTTGACAGAGAATCTTGTTCTTTTAACAAAAGCAAAAGATGGCAT 120
|||||||| |||||||||||||||||||||||||| | ||| |||||| |||||||| ||
Sbjct 87 GAGAAAGAAAGGTGACTTGACAGAGAATCTTGTTC-TGTAATAAAAGC-AAAGATGGTAT 144
Query 121 CGAAAACTCCTTCCACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAA 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CGAAAACTCCTTCTACATCGTCTGATGAAGCAAATGCTACTGCAGATGAAAGATGTAGAA 204
Query 181 AAGGTAAAGTACCTAAAAGGATTAACAAGGCTGTTCGTGAGAGGCTTAAGCGCGAGCATT 240
||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 205 AAGGTAAAGTACCGAAAAGGATCAACAAGGCCGTTCGTGAGAGGCTTAAGCGTGAGCATT 264
Query 241 TGAATGAGCTTTTCATCGAATTAGCTGATACTCTTGAACTGAATCAACAGAATAGTGGGA 300
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 265 TGAATGAGCTTTTCATTGAATTAGCCGATACTCTTGAACTGAATCAACAGAACAGTGGGA 324
Query 301 AAGCTTCCATACTATGCGAAGCTACTCGGTTTTTGAAAGACGTGTTTGGTCAAATCGAGT 360
||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct 325 AAGCTTCTATACTATGCGAAGCTACTCGATTCTTGAAGGACGTGTTTGGTCAAATTGAGT 384
Query 361 CTCTTAGAAAGGAGCACGCTTCTCTCCTCTCTGAATCTAGCTATGTAACGACAGAGAAGA 420
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 385 CTCTTAGAAAGGAGCATGCTTCTCTCCTATCTGAATCTAGCTATGTAACCACAGAGAAGA 444
Query 421 ATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATCTCGAAACTACAAAACGAGA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 445 ATGAGCTCAAGGAAGAAACATCAGTGCTTGAGACTGAGATTTCGAAACTACAAAACGAGA 504
Query 481 TAAAAGCAAGAGA-AAGTCAATCGAAACCCGACTTGAACACCTCTCCTGCATCCGAGTAC 539
| |||| |||| || ||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 505 TTGAAGCTAGAGCGAA-TCAGTCGAAACCTGACTTGAACACCTCTCCTGCACCCGAGTAC 563
Query 540 CATCATCATCAT---CAGCA------TCCTGAACTTGCATCTCAGTTCCCAGGACTTCCC 590
|||||||||||| || || |||||||| || ||||||||||||||||||||||
Sbjct 564 CATCATCATCATTATCAACAACAACATCCTGAACGTGTATCTCAGTTCCCAGGACTTCCC 623
Query 591 ATTTTCCAAGGCCCCGGCTTTCAACAATCTGCTGCAACGT-TTCCTCCTCCTGCAACAGT 649
||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||
Sbjct 624 ATTTTCCAAGGCCCCGGCTTTCAACAATCTGCTACAAC-TCTTCATCCTCCTGCAACAGT 682
Query 650 TCTTGCCCTTCCTATACAACCTGATCTCCAGACACAAGATATCTCAGAAATGACACAAGC 709
||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 683 TCTTGTCCTTCCAATACAACCTGATCCCCAGACACAAGATATCTCAGAAATGACTCAAGC 742
Query 710 GCAGCCG--TT-GATGTATAATACCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAG 766
||||| | || ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 743 GCAGCAGCCTTTGATGTTTAATAGCTCAAATGTGAGTAAGCCATGTCCAAGGTATGCTAG 802
Query 767 TGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAGAGCGGCTGAAAGCCAGTGAATGAGG 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CGCGGCTGACTCGTGGTCTTCTCGGCTACTTGGAGAGCGGCTGAAAGCCAGTGAATGAGG 862
Query 827 TCTTGAGCGGCTCCACATGGAGTAGCAACACAAGTTA-A-GACATGGCAACAACTTATGA 884
|||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||||||
Sbjct 863 TCTTGAACGGCTCCACATGGAGTAGCAACGCAAGTTATAAGACATGGCAAC---TTATGA 919
Query 885 AGGACCCTGGttttttattttttA---CATCGT-CTGATGTCCTTGTGGGTTTGGCCTTG 940
||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 920 AGGACTCTGGTTTTGTATTTTTTAATACATCGTTCTGATGTCCTTGTGGGTTTGGCCTTG 979
Query 941 GCCATTTCTTGTTTTTGATGTGGTTGTTCATAGGATCAGGAAGTTATGGCCTTTACTTTA 1000
|| ||||||||||||||||| | |||||||||||||||||||||||||||||| | |
Sbjct 980 GCTATTTCTTGTTTTTGATG-G-TTGTTCATAGGATCAGGAAGTTATGGCCTTGA-T--- 1033
Query 1001 TGGGTCGTTTGAGATAAATAAGTAAATTAGCTCTAACCATTG 1042
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 -GGGTCGTTTGAGATAAATAAGTAAATTAGCTCTAACCATTG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5