BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485130
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47650.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain super... 778 0.0
> AT3G47650.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily
protein | chr3:17569505-17570567 FORWARD LENGTH=787
Length=787
Score = 778 bits (421), Expect = 0.0
Identities = 466/487 (96%), Gaps = 6/487 (1%)
Strand=Plus/Plus
Query 1 GAGAGGAGCCATCTTATC--TGCTATCGAGTGGGTAAGAAGAACCAGAAAACAGAAAATG 58
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 15 GAGAGGAGCCATCTTATCTTTGCTATCGAGTGGGTAAGAAGAATCAGAAAACAGAAAATG 74
Query 59 GCGAATTCAGTATGCTTCTTCTCTTCTCCTCCTACTTTTTGCTTCCAATCCCCCAGCAAA 118
||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 75 GCGAATTCACTATGCTTCTTCTCTTCTCCTCCTACCTTTTGCTTCCAATCTCCAAGCAAA 134
Query 119 AACCCTAAACCTTCTCACTTCTTCTCAACTAATAATAACACCTCTTCCTTGGTCCAGAAG 178
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 135 AACCCTAAACCTTCTCACTTCTTCTCAACTAATGATAACACCTCTTCCTTGGTACAGAAG 194
Query 179 AGAGAACTGCTTCAGACTTCAAAATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAAT 238
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 195 AGAGAACTGCTTCAGACTTCAAGATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAAT 254
Query 239 CCTCAGAGCACTAAACCGAACAGTTTAGTTTGTGCAAATTGTG-ATGGAAACGGTTGTGT 297
|||||| |||||||||| ||||||||||||||||||||||||| | || || ||||||||
Sbjct 255 CCTCAGGGCACTAAACCAAACAGTTTAGTTTGTGCAAATTGTGAAGGGGAA-GGTTGTGT 313
Query 298 GGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTT 373
Query 358 TAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTG 433
Query 418 CAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTTGATGAGTAGTTCAAAATA-G 476
||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |
Sbjct 434 CAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTCGATGAGTAGTAGAAA-TAAG 492
Query 477 CTTCTTC 483
|||||||
Sbjct 493 CTTCTTC 499
Score = 257 bits (139), Expect = 8e-68
Identities = 197/222 (89%), Gaps = 15/222 (7%)
Strand=Plus/Plus
Query 482 TCTTTTATAAACTTTAGAAGAAGTAAATCTTTCTCTCTATCAATGCTCTTCTATACCAAA 541
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 TCTTTTATAAACCTTAGAAGAAGTAAATCTTTCTCTCTATCAATGCTCTTCTTTACCAAA 598
Query 542 AACATGTATTTCTATTTGTTATTGCACACCAAACTTTTATTGTATTGTTGTTTTTCAGAT 601
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 599 AACATGTATTACTATTTGTTATTGCACACCAAACTTTTGTTGTATTTTTGTTTTTCAGAT 658
Query 602 GCTTCTCTC-Ct-t-t-t--tttt--GTCTTCTACAAATTGAAATATTGTTAAAGTTTAT 653
|||||||| || | | | |||| ||||||||||||||| || ||||| |||
Sbjct 659 TCTTCTCTCTCTCTCTCTCGTTTTTTGTCTTCTACAAATTGC--TA-----AAAGTCTAT 711
Query 654 AGCACTTCTATGGAAGTCTTGTTGATGGCTTGAAATGTTGAA 695
||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 712 AGCACCTCTATGGTAGTCTTGTTGATGGCTTGAAATGTTGAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33656878490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5