BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485131
Length=2889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47660.1 | Symbols: | Regulator of chromosome condensation ... 4252 0.0
> AT3G47660.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:17571192-17574805 FORWARD LENGTH=2865
Length=2865
Score = 4252 bits (2302), Expect = 0.0
Identities = 2655/2825 (94%), Gaps = 25/2825 (1%)
Strand=Plus/Plus
Query 73 GCGATAGCGATTCTCAAGAAAGGAGCTTATCTATTGAAATACGGCCGTCGTGGGAAGCCT 132
|||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 58 GCGATAGCAATTCTGAAGAAAGGGGCTTATCTTTTGAAATACGGCCGCCGTGGGAAGCCT 117
Query 133 AAATTCTACCCTTTTCGGCTTTCAAGTGATGAAATATATTTGTTATGGTATTGTGGTAAA 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAATTCTACCCTTTTCGGCTTTCAAGTGATGAAATATATTTGTTATGGTATTGTGGTAAA 177
Query 193 AAGGAGAAACGTCTTAAGCTGAGTTCTGTGACAAGGATCATACCTGGACAGCGAACTGCA 252
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAGGAGAAACGTCTTAAACTGAGTTCTGTGACAAGGATCATACCTGGACAGCGAACTGCG 237
Query 253 GTTTTCCGACGATACCCTCAACCCACCAAGGAATATCAATCCTTTTCTCTTATATATGGC 312
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTTTCCGACGATATCCTCAACCCACCAAGGAATATCAATCCTTTTCTCTTATATATGGC 297
Query 313 GAACGGTCTCTCGATTTGGACAAGGATGAAGCTGAGTTTTGGCTCACTACACTTCGCGCT 372
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 298 GAACGGTCTCTCGATTTGGACAAGGATGAAGCTGAGTTCTGGCTCACTACCCTTCGCGCT 357
Query 373 CTTCTCTCACGAAACAACTCTTCTTCTGCATTGGTACTTCACTCAAGAAGCCGTAGTTTT 432
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 358 CTTCTCTCACGAAACAA--C-TCTTCTGCATTGGTACTTCACTCAAGAAGCCGTAGTCTT 414
Query 433 GCTCCTGAAAATGGAGAACAAAGTAGTACGAGCAAGAACTCTAAGTCCAACATCAGATCT 492
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 415 GCTCCTGAAAATGGAGAACAAAGTAGTTCGAGCCAGAACTCGAAGTCCAACATCAGATCT 474
Query 493 GTCAGCAGTGACACAAGCTACGAGGAACATGCAAAAAAGGCCTCAGGATCACACTGCAAC 552
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 475 GTCAGCAGTGACACAAGCTATGAGGAACATGCAAAAAAGGCCTCAGGATCTCACTGCAAC 534
Query 553 ACTCCACAGAGACTGGGGAAAGTTTTCTCAGAGGTTTTGTCACAAACTGCAGTACTAAAG 612
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 535 ACTCCACAGAGACTGGGGAAAGTTTTCTCAGAGGTTCTGTCACAAACTGCAGTACTAAAG 594
Query 613 GCACTCTCTTTGGATGAACTGGTTCATAAACCTCATACTTCGCCTCCAGAGGCTATAGAT 672
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 595 GCACTCTCTTTGGACGAACTGGTTCATAAACCTCATACTTCGCCTCCAGAGACTATCGAG 654
Query 673 AATCGATCTACTAATCA---CTCCCCTGCCGTTGATACAAGTAAATATAGCGTTTCCAGC 729
|||||| | || ||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct 655 AATCGACCAACAAATCACTCCTCCCCTGGCGTTGATACAAGTAAATATAGCATTTCCAGC 714
Query 730 GCAGTGAGCTCATCTAGTCAAGGCTCATGTTTTGAAGACTTGAAGTCTCTCTGTGATGTC 789
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 715 GCAGTGAGTTCATCTAGTCAAGGATCAACTTTTGAAGACTTGAAGTCTCTCTGTGATGTC 774
Query 790 TTTGTTTGGGGAGAAAGTATTGGAGATGGGCTACTAGGAGGTGGCATGCATAAAAGTGGC 849
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 775 TTTGTTTGGGGAGAAAGTATTGGAGATGGGCTATTAGGAGGTGGTATGCACAAAAGTGGC 834
Query 850 AGCAGCTCTTCTCTGATGACTGATTCTTTTTTACCCAAAGTCTTGAAATCACATGTGGCA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGCAGCTCTTCTCTGATGACTGATTCTTTTTTACCCAAAGTCTTGAAATCACATGTGGCA 894
Query 910 CTTGATGCACAGAGCATTTCTTGCGGCACCAATTATGCAGTGTTAGTCACAAAGCAGGGA 969
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 895 CTTGATGCACAGAGCATTTCTTGCGGTACCAATTATGCAGTGTTAGTAACAAAGCAGGGA 954
Query 970 CA-ATTGTACAGCTGGGGAGAAGAATCTGGTGGCAGGTTAGGACATGGAGTTTGTTCCTA 1028
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CAGAT-GTACAGCTGGGGAGAAGAATCTGGTGGCAGGTTAGGACATGGAGTTTGTTCCTA 1013
Query 1029 CGTTCCACACCCAAAGCTTATCGATGAATTTGACGGATCAACGGTAGAGTTAGCTGACTG 1088
|||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 1014 TGTTCCACACCCAAAACTTATTGATGAATTTAACGGATCAACGGTGGAGTTAGCTGACTG 1073
Query 1089 TGGGGAATTTCATACCTGTGCTGTAACAACCTCAGGGGATCTATATGCTTGGGGTGATGG 1148
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1074 TGGGGAATTTCATACATGTGCTGTAACAGCCTCAGGGGATCTATATGCTTGGGGTGATGG 1133
Query 1149 AGACCACAATGCCGGTCTCCTTGGACTTGGTAGTGGAGCTAGCCATTGGAAACCGGTACG 1208
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1134 AGATCACAATGCCGGTCTCCTTGGACTTGGTAGTGGAGCTAGCCACTGGAAACCGGTACG 1193
Query 1209 AATTCTCGGTCAGATGGAAGGTATAAATGTAAGAA-CTATATCTTGCGGACCTTGGCATA 1267
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 1194 AATTCTCGGTCAGATGGAAGGTATATATGTAA-AAGCTATATCTTGCGGACCTTGGCATA 1252
Query 1268 CAGCTTTTGTGACATCAGCAGGTAAGCTATTTACATTTGGTGATGGTACTTTTGGTGCGC 1327
|||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1253 CAGCGTTTGTAACATCAGAAGGTAAGCTGTTTACATTTGGTGATGGTACTTTTGGTGCGC 1312
Query 1328 TTGGACACGGTGATCGTATAAGCACAAACATTCCTAGAGAAGTAGAGGCGCTAAATGGCT 1387
||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1313 TTGGACATGGTGATCGTATTAGCACAAACATACCTAGAGAAGTCGAGGCATTAAATGGCT 1372
Query 1388 GCAGAACAATAA-GGACAGCTTGTGGCGTTTGGCATTCAGCCGCTGTTGTCAGTGTTTTC 1446
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1373 GCAGAACAATAAAGG-CAGCTTGTGGCGTTTGGCATTCAGCTGCTGTTGTCAGTGTTTTC 1431
Query 1447 GGTGAGGCCTCATCATCAGGAAAGCTCTTTACTTGGGGTGATGGAGATGATGGGAAACTC 1506
||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1432 GGTGAGGCCACATCATCAGGGAAGCTTTTTACTTGGGGCGATGGAGATGATGGGAGACTC 1491
Query 1507 GGACATGGTGATATAGCGTCTAGACTAATCCCAT-TGAGTGTAACTGAACTGGATACAAC 1565
|||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||
Sbjct 1492 GGACATGGTGATATAGAGTGTAGACTAATCCCATCTT-GTGTAACTGAACTGGATACAAC 1550
Query 1566 TAGCTTTCAACAGGTAGCTTGTGGCCAGAGCATAACTGTTGCTCTCTCTATGTCTGGACA 1625
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1551 TAGCTTTCAACAGGTGGCTTGTGGCCAGAGCATTACTGTTGCTCTCTCTATGTCTGGACA 1610
Query 1626 AGTTTATGCTATGGGAACTGCTGATCCGAGTCAGGATGATGTTGTGAGAGCTCCTTCTTG 1685
||||||||| ||||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 1611 AGTTTATGCAATGGGAACTGCTGATCCGAGTCATGAT-AT-T-GTGAGAGCTCCTTCTTG 1667
Query 1686 TATTGAAGGGGGTCTAGGAAAGAGTTTTGTCCAAGAAGTGGCTTGCGGGTATCACCATAT 1745
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1668 CATTGAAGGGGGTCTAGGAAAGAGTTTCGTCCAAGAAGTGGCTTGCGGGTTTCACCATAT 1727
Query 1746 CGCGGTTTTGAATTCGAAAGCTGAGGTCTACACTTGGGGCAAAGGATCAAACGGACAGCT 1805
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 CGCAGTTTTGAACTCGAAAGCTGAGGTCTACACTTGGGGCAAAGGATCAAACGGACAGCT 1787
Query 1806 TGGGCATGGAGACACTGAATATAGACGCATGCCGACTCTTGTGAAAGCTTTAAAAGGTAA 1865
||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1788 CGGGCACGGAGACACTGAATATAGATGCATGCCGACTCTTGTGAAAGCTTTGAAAGGTAA 1847
Query 1866 ACAAGTGAGAAAAGTGGTGTGTGGTTCTAATTACACAGCAACAATTTGTCTTCACAAACC 1925
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1848 ACAGGTGAGAAAAGTGGTGTGTGGTTCTAATTACACAGCAACCATTTGTCTTCACAAACC 1907
Query 1926 AATTACGGGTACTGATAGTACTAGGTGCTCTGGTTGTCGCCATCCTTTTAATTACATGAG 1985
||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 1908 CATTACGGGTACCGATAGTACTAAGTGCTCCGGTTGTCGCCATCCTTTTAACTACATGAG 1967
Query 1986 GAAGCTTCACAACTGTTATAACTGTGGGAGTGTCTTCTGTAATTCATGCACTAGTAAGAA 2045
|||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| ||
Sbjct 1968 GAAGCTTCACAACTGTTACAACTGCGGGAGTGTTTTCTGTAATTCTTGCACAAGTAAAAA 2027
Query 2046 ATCCTTAGCAGCAGCTATGGCTCCCAAGACGAACAGGCCTTACCGTGTTTGTGATGACTG 2105
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2028 ATCCTTAGCAGCAGCCATGGCTCCCAAGACGAACAGGCCTTACCGTGTCTGTGATGACTG 2087
Query 2106 CTATATCAAACTCGAAGGAATTAGAGAATCTTTAGGAACTCCAGCAAATAGTGCCAGGTT 2165
|||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 2088 TTATATCAAACTCGAAGGAATTAGAGAATCTTTAGCAACACCTGCAAATAGTGCCAGGTT 2147
Query 2166 TTCAAACGCAAGTCTACCATCTAGCAGTAACGAGATGGATGAAATTGGTACAACACCGCA 2225
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 2148 TTCAAACGCAAGTCTACCATCTAGC--TA-CGAGATGGATGAAATTGGTATAACACCGCA 2204
Query 2226 GCGTCAGCTTCTTCATAGGGTGGACTCATTTGATTTCTTCAGACAAACTAAG-ATCCCGG 2284
|||||||||||| | || ||||| ||||||||||||||||||||||||||| | | |||
Sbjct 2205 GCGTCAGCTTCT--A-AGAGTGGATTCATTTGATTTCTTCAGACAAACTAAGCA-CGCGG 2260
Query 2285 ACCTAAAAACCATTGGTGAAACTTCAGGAACAAGCTGCACGTCGTCGACTCACTCAAATA 2344
|||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||| |
Sbjct 2261 ACCTGAAAACCATTGGTGAAACTTCAGGAGGAAGCTGCACGTCTTCGATTCACTCAAACA 2320
Query 2345 TGGATATTAAAGGTAGTTTCAACCTGAAAGGCATACGTCGACTCACCAGGCTAACTTCTT 2404
||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||
Sbjct 2321 TGGATATTAAAGGTAGTTTCAACCTGAAAGGCATACGACGACTCTCTAGGCTTACTTCTT 2380
Query 2405 TTGATTCGGTTAAACAAGAAGGCAAACAACGTTCCAAGCATTGCGCTTCGAAATCAGACA 2464
||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2381 TTGATTCAGTTCAAGAAGAAGGCAAACAACGTACCAAGCATTGCGCTTCGAAATCCGACA 2440
Query 2465 CATCCTCTCTTATAAGACACTCAGTGACGTGTGGTCTCCCATTTTCACGTAGAGGTTCTG 2524
|||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 2441 CATCCTCTCTTATAAGACACTCGGTGACTTGTGGTCTACCGTTTTCACGTAGAGGTTCTG 2500
Query 2525 TTGAGTTGTTTCCTTTATCGATAAAATCCAGCCCGGTTGAATCTGTTGCAACTACTTCAG 2584
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 2501 TTGAGTTGTTTCCTTTATCGATAAAATCCAGCCCCGTTGAATCCGTTGCGACTACTTCAG 2560
Query 2585 ACTTCACAACCGACATTACAGATCATGATTTACTGCAAGAAGTGCCAAAGAAATCCAATC 2644
||||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 2561 ACTTCACCACAGACATTACTGATCATGAGTTACTACAAGAAGTGCCAAAGAAATCCAACC 2620
Query 2645 AGTGCCTGAGCCATGAAATATCAGTACTCAAAGCACAGGTGGAAGAGCTTACTCTAAAAT 2704
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2621 AGTGCCTAAGCCATGAAATATCAGTACTCAAAGCACAGGTGGAAGAGCTTACTCTAAAAT 2680
Query 2705 CGAAAAAACTAGAAGCCGAACTAGGAATGACATCGAAGAAGCTTGAAGTCGCAGTACTAA 2764
|||| ||||||||| ||||||| |||| ||| ||||||||||||||||| || |||||||
Sbjct 2681 CGAAGAAACTAGAAACCGAACTTGGAAAGACTTCGAAGAAGCTTGAAGTTGCGGTACTAA 2740
Query 2765 TGGCGCGTGATGATGCAGAGAAGATCAAATCATCAGAAGAGATAGTCAGATCCCTAACAC 2824
||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 2741 TGGCGCGAGATGATGCAGAGAAGATCAAATCTTCAGAAGAGATAGTCAGATCCTTAACTC 2800
Query 2825 TGCAGTTGATGAACGCTACCAAGAAAGAAGTAGACAAGACAAGAAGACGCCGGAACTCGT 2884
|||||||||||||| | |||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 2801 TGCAGTTGATGAACACAACCAAGAAAGAAGTAGACAAGACAAGGAGACACCGAAACTCGT 2860
Query 2885 TTTGA 2889
|||||
Sbjct 2861 TTTGA 2865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143577790866
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5