BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485133
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end ... 1943 0.0
AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protei... 556 1e-157
> AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end
binding protein EB1A | chr3:17581096-17583586 FORWARD LENGTH=1328
Length=1328
Score = 1943 bits (1052), Expect = 0.0
Identities = 1216/1292 (94%), Gaps = 24/1292 (2%)
Strand=Plus/Plus
Query 1 ATCTTTCCAGTTGCCGCTGCCAGCCGTTT-C--CTTCTGCTTTTTCACTTTTCCGTTCTC 57
|||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||
Sbjct 1 ATCTTTCCAGTTGCCGTTGCCAGCCGTTTCCTACTTGTGCTTTTTCACTTTTCCGTTCTC 60
Query 58 TCAAACCtttttttCTCTGCTT-C----CGTTTCTCCGTTCAAAACAAGATCGAATCATA 112
||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 61 TCAAACC-TTTTTTCTCTGCTTCCGTTTCGTTTCTCCGTTCAAAACAAGATCGAATCATA 119
Query 113 AAAAGATTACTCCtttttttCTTCTCGAAAGAAAGGAGAATTCTTGACGTCTTCTGCTCC 172
||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct 120 AAAAGTTTCCTCCTTTTTTTCTTCTCGAAACAAAAGAGAATTCTTGACGTCTTCTACTCC 179
Query 173 ATTTTCCGTCAATACCCATTTCTTCTATCGCTCTCGTTTCCAAG--AAAAGAGGGGTTTA 230
||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 180 ATTTTCCATCAATACCCATTTCTTCTATCGCTCTCGTTTCCAAGAAAAAAGAGGGTTTTA 239
Query 231 GAGAAAAGCAAAACTCAAATGGCGACGAACATCGGAATGATGGATAGTGCTTACTTCGTC 290
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 GAGAGAAGCAAAACTCAAATGGCGACGAACATCGGAATGATGGATAGTGCATACTTCGTC 299
Query 291 GGAAGAAACGAGATTCTGACTTGGATCAATGATCGTCTTCAGCTCAATCTCTCTCGCGTC 350
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 300 GGAAGAAACGAGATTCTGACTTGGATTAATGATCGTCTTCACCTCAATCTCTCTCGCGTC 359
Query 351 GAAGAGGCTGCATCCGGTGCTGTGCAATGTCAAATGCTTGATATGACCTTTCCAGGAGTT 410
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 360 GAAGAGGCTGCATCTGGTGCTGTGCAATGTCAGATGCTTGATATGACATTTCCAGGAGTT 419
Query 411 GTGCCAATGCACAAGGTTAACTTTGATGCAAAGAACGAGTACGACATGATACAGAACTAC 470
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 420 GTGCCAATGCACAAGGTTAACTTTGATGCAAAGAACGAGTACGATATGATACAAAACTAC 479
Query 471 AAGATCCTGCAAGATGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGG 530
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGGTCTTGCAAGATGTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGG 539
Query 531 CTTGTCAAAGGCCGACCACTGGACAACTTGGAGTTTTTGCAATGGCTGAAACGTTTCTGT 590
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 540 CTTGTCAAAGGCCGGCCACTGGATAACTTGGAGTTTCTGCAATGGCTGAAACGTTTCTGT 599
Query 591 GATTCCATTAATGGTGGCATTATGAATGAGAATTATAATCCAGTGGAGCGAAGATCAAGA 650
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 600 GATTCCATTAATGGTGGCATTATGAATGAGAACTATAATCCAGTGGAGCGAAGATCAAGA 659
Query 651 AATGGTAAAGAGAGGAGTGTGAAGGGATCTAACAAGATTCCAAAGTCACTGCAAACTAAC 710
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 660 AATGGTAAAGAGAGGAGTGTGAAGGGATCTAATAAGATTCCAAAGTCACTGCAAACAAAC 719
Query 711 AATAATCATCCTCTACCCAATTCCGGTTCAGTTGGACTTAGCAAAGCATCAGGGCCCAAG 770
||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 720 AATAACCATCCTCCACCCAATTCCAGTTCAGTTGGTCTTAGCAAAGCATCAGGGCCCAAG 779
Query 771 CCAGCAAAAGCAGCTGAAGTGCAGGCTTTGTTGAAGGAGCTTGCGGATCTCAAGATCTCT 830
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 780 TCAGCAAAAGCAGCTGAAGTGCAGGCTTTGTCGAAGGAGCTCGTGGATCTCAAGATCTCT 839
Query 831 ACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGGATGTTGAGATA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 ACTGATCTCTTGGAAAAAGAAAGAGACTTTTACTTCTCCAAGCTCCGGGATGTAGAGATA 899
Query 891 CTCTGCCAAACTCCTGAATTAGATGATCTTCCGATAGTGGTAGCAGTGAAGAAGATACTG 950
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCTGCCAAACTCCTGAGCTAGATGATCTTCCGATAGTGGTAGCAGTGAAGAAGATACTG 959
Query 951 TATGCAACCGATGGAAATGAATCTGCACTAGAAGACGCCCAAGAGTACTTAAACCAGTCC 1010
||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 960 TATGCAACCGATGCAAATGAATCTGCATTAGAAGACGCTCAAGAGTACCTAAACCAGTCC 1019
Query 1011 CTAGGAGTTGAAGATGA--A-GCTGAAGCAAACGGAGAACAACAGGAAGAAGAAAAGACT 1067
||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||
Sbjct 1020 CTAGGAGTTGAAGATGATGAAGCTGAAGGAAACGGAGAACAACTGGAAGAAGAAAAGACT 1079
Query 1068 CAAGCCTAAGCTCTGACTATTAACAATCCTAAGTAGAAGGGGTGACAGA-CAATGGCTTG 1126
||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
Sbjct 1080 CAAGCCTAAGCTCTGACTATTAACAATCCTAAGTAGAAGGG-TGAC-GAACAATGGCTGG 1137
Query 1127 CCATAGCCTT-TCTTGCAAGTTTCTTTTGTTAAAGGAAACTAACTGAAACTTGAAGATGA 1185
|||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1138 CCATGGCCTTCTCTTCCAAGTTTCTTTTGTGAAAGGAAACTAACTGAAACTTGAAGATGA 1197
Query 1186 ATGAGCTT-----ATTAGAAACCTTTAGTTTGAAAACAGTGAGACTTATTTTTGTTACTA 1240
|||||||| |||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 1198 ATGAGCTTCTTCTATTAGAAAGATT-AGTTTGAAAACAAAGAGACTTATTTTTGTTACTA 1256
Query 1241 TTCAAGAGGCtttttttttGTTTTAAAACAAT 1272
|||||||||||||||| |||||||||||||||
Sbjct 1257 TTCAAGAGGCTTTTTTCTTGTTTTAAAACAAT 1288
> AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protein
1B | chr5:25092641-25095244 FORWARD LENGTH=1408
Length=1408
Score = 556 bits (301), Expect = 1e-157
Identities = 424/483 (88%), Gaps = 9/483 (2%)
Strand=Plus/Plus
Query 247 AAATGGCGACGAACATCGGAATGATGGATAGTGCTTACTTCGTCGGAAGAAACGAGATTC 306
|||||||||||||||| || |||||||||||||||||||| || ||||| || |||||||
Sbjct 287 AAATGGCGACGAACATTGGGATGATGGATAGTGCTTACTTTGTTGGAAGGAATGAGATTC 346
Query 307 TGACTTGGATCAATGATCGTCTTCAGCTCAATCTCTCTCGCGTCGAAGAGGCTGCATCCG 366
||| |||||||||||| || ||||| |||||||||||||| |||||||||||||||| |
Sbjct 347 TGAGTTGGATCAATGACCGCCTTCATCTCAATCTCTCTCGTATCGAAGAGGCTGCATCAG 406
Query 367 GTGCTGTGCAATGTCAAATGCTT-GATATGACCTTTCCAGGAGTTGTGCCAATGCACAAG 425
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 407 GTGCTGTGCAATGTCAAATG-TTGGACATGACTTTTCCAGGAGTTGTGCCAATGCACAAG 465
Query 426 GTTAACTTTGATGCAAAGAACGAGTACGACATGATACAGAACTACAAGATCCTGCAAGAT 485
||||||||||| ||||||||||||||||| |||||||| ||||||||| || |||||||
Sbjct 466 GTTAACTTTGAAGCAAAGAACGAGTACGAAATGATACAAAACTACAAGGTCATGCAAGAA 525
Query 486 GTGTTCAACAAGCTGAAAATTACAAAGCCATTGGAAATTAACAGGCTTGTCAAAGGCCGA 545
|| |||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 526 GTCTTCACCAAATTGAAAATTACAAAGCCATTGGAAGTCAACAGGCTTGTCAAAGGCCGA 585
Query 546 CCACTGGACAACTTGGAGTTT-TTGCAATGGCTGAAACGTTTCTGTGATTCCATTAATGG 604
||||| ||||| ||||||||| || |||||| |||||||||| || ||||| || |||||
Sbjct 586 CCACTAGACAATTTGGAGTTTCTT-CAATGGTTGAAACGTTTTTGCGATTCAATAAATGG 644
Query 605 TGGCATTATGAATGAGAATTATAATCCAGTGGAGCGAAGATCAAGAAATGGTAAAGAGAG 664
||||||||||| ||||||||||||||||| || |||||||||||| ||| | |||||
Sbjct 645 CGGCATTATGAACGAGAATTATAATCCAGTAGAACGAAGATCAAGAGGTGGGAGAGAGAA 704
Query 665 GAGTGTGAAGGGATCTAACAAGAT-TCCAAAGTCACTGCAAACTAACAATA---ATCATC 720
|| || |||||||||| ||||| || ||||||| ||||||| ||||||| ||||||
Sbjct 705 AAGCGTAAAGGGATCTAGTAAGATCTC-AAAGTCATTGCAAACAAACAATATGCATCATC 763
Query 721 CTC 723
|||
Sbjct 764 CTC 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5