BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485134
Length=2543
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47700.1 | Symbols: MAG2 | RINT-1 / TIP-1 family | chr3:1758... 2211 0.0
> AT3G47700.1 | Symbols: MAG2 | RINT-1 / TIP-1 family | chr3:17583601-17586624
REVERSE LENGTH=2606
Length=2606
Score = 2211 bits (1197), Expect = 0.0
Identities = 1379/1466 (94%), Gaps = 15/1466 (1%)
Strand=Plus/Plus
Query 1081 GCTCATTGTCTTTGTACTTGGTGAAAGAGATATTCCCTATATATGTTGGACAGCTAAACG 1140
||||| ||||||||||||||||||||||||| || |||||||||||||| |||||| |||
Sbjct 1152 GCTCACTGTCTTTGTACTTGGTGAAAGAGATCTTTCCTATATATGTTGGTCAGCTAGACG 1211
Query 1141 AAGCAAATGAAACTGATCTTCGTTCTGAGGCCAAGGTTTCGTGGCTCCATCTCATTGACC 1200
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1212 AAGCAAATGAAACTGATCTTCGTTCTGAGGCTAAGGTCTCGTGGCTCCATCTCATTGACC 1271
Query 1201 TGATGATCTCTTTTGATAAGCGAGTACAGTCTCTGGTATCACAATCAGGAATACTTTCGC 1260
|||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1272 TGATGATCTCCTTTGATAAGCGAGTTCAGTCTTTGGTATCACAATCAGGAATACTTTCGC 1331
Query 1261 TTCAAGAAGATGGGAATCTTCTGAGAATTTCCTCTCTCTCAGTTTTCTGTGACAGACCTG 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TTCAAGAAGATGGGAATCTTTTGAGAATTTCCTCTCTCTCAGTTTTCTGTGACAGACCTG 1391
Query 1321 ATTGGCTTGATTTATGGGCAGAGATAGAGCTAGATGAGAGGCTAGTCAAATTCAAGGCAG 1380
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1392 ATTGGCTTGATTTATGGGCAGAGATAGAGCTAGATGAGAGGCTCGTCAAATTCAAGG-AG 1450
Query 1381 AA-ATTGATAACGACAGAAATTGGACAGCAAAGGTCCAAGACGAACTCATCTCCACTTCC 1439
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1451 GAGATTGATAACGACAGAAATTGGACAGCGAAGGTCCAAGACGAACTCATCTCCAGTTCC 1510
Query 1440 AACGTTTACAGACCACCAATCATTTCCAGCATCTTTCTACAGCACTTGTCATCAATAATC 1499
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1511 AACGTTTACAGACCACCAATCATTTCCAGCATCTTTCTACAGCATTTGTCATCAATAATC 1570
Query 1500 GAACGATCCAAATCAGTGCCGGCCATT-TACTTGAGGGCAAGGTTCCTGAAATTGGCAGC 1558
|||||||||||||||||||||||| || || |||||||| |||||||||| | |||||||
Sbjct 1571 GAACGATCCAAATCAGTGCCGGCC-TTATATTTGAGGGCTAGGTTCCTGAGACTGGCAGC 1629
Query 1559 CTCACCAACAATCCATAAGTTCTTGGATTGTCTCCTTGTCAGGTGCCAAGATGCCGAAGG 1618
|||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| ||
Sbjct 1630 CTCACCAACAATTCATAAGTTCTTGGATTGCCTCCTTCTCAGGTGCCAAGACGCCGACGG 1689
Query 1619 ACTAACTGCATTAACCGAAAATAACGATCTAATCAAGGTCTCAAACTCTATCAATGCTGG 1678
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1690 ACTAACTGCATTAACTGAAAATAACGATCTAATCAAGGTCTCGAACTCTATTAATGCTGG 1749
Query 1679 TCACTACATTGAATCTGTATTAGAAGAATGGTCTGAAGATGTATTTTTCCTCGAAATGGG 1738
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1750 TCACTACATTGAATCTGTCTTAGAAGAATGGTCTGAGGATGTCTTTTTCCTTGAAATGGG 1809
Query 1739 AACTGGACAGCATGATCCACAGGAAGTTCCAGGACTGGAGAACTTTACGGAACCTTCTGA 1798
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1810 AACTGGACAGCACGATCCACAGGAAGTTCCAGGACTGGAGAACTTTACTGAACCTTCTGA 1869
Query 1799 AGGTATTTTCGGAGAAGAATTTGAGAAGTTGGAGAAGTTCCGGCTAGAGTGGATAAACAA 1858
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1870 AGGTATTTTCGGAGAAGAATTTGAAAAGTTGGAGAAGTTCCGGCTAGAGTGGATAAACAA 1929
Query 1859 GTTGTCTGTGGTGGTCTTGAGAGGCTTTGATGCTCGAACTC-GAGAATACATAAAAAACA 1917
||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1930 ATTGTCGGTGGTGATCTTGAGAGGCTTTGATGCTCGAA-TCCGAGAATACATAAAAAACA 1988
Query 1918 GAAAGCAATGGCAGGAGAAGAGAGACAAAGAATGGACGGTGTCAAGGGCACTAGTTGGGG 1977
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1989 GAAAGCAATGGCAGGAGAAGAAAGACAAAGAATGGACGGTGTCAAGGGCACTAGTTGGGG 2048
Query 1978 CTCTAGACTACTTGCAAGGAAAAGCGTCTATAATAGAAGAAAATCTAAACAAAACAGACT 2037
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2049 CTCTAGACTACTTGCAAGGAAAAACGTCTATAATAGAAGAAAATCTAAACAAAGCAGACT 2108
Query 2038 TTACAGCTATGTGGAGGACTCTAGCCTCTGAAATAGACAAGTTATTCTTCAACAGCATCT 2097
|||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 2109 TTACCGCTATGTGGAGAACTCTAGCCTCAGAGATAGACAAGTTGTTCTTCAACAGCATCT 2168
Query 2098 TGATGGCAAACGTGAAGTTTTCCAATGATGGAGTCGAAAGGTTAAAAGAAGACATGGAGG 2157
||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2169 TGATGGCGAACGTGAAGTTTACCAATGATGGAGTCGAAAGGTTAAAAGTAGACATGGAGG 2228
Query 2158 TTCTCTATGGGGTTTTCAGGACATGGTGCGTTAGACCCGAAGGTTTCTTTCCTAAACTAA 2217
|||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2229 TTCTATATGGGGTTTTCCGGACGTGGTGTGTTAGACCCGAAGGTTTCTTTCCTAAACTAA 2288
Query 2218 GTGAGGGGCTTACGCTTCTGAAGATGGAAGAGAAGCAAGTGAAGGATGGTCTGAGTAGAG 2277
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2289 GTGAGGGGCTTACGCTTCTGAAGATGGAAGAGAAGCAAGTGAAGGACGGTCTGAGTAGAG 2348
Query 2278 GCGATAAGTGGTTACGTGAGAACAGAGTTCGATATTTGAGTGAAGCCGAAGCCAAGAAGG 2337
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2349 GCGATAAGTGGCTACGTGAGAATAGAATTCGATATTTGAGTGAAGCCGAAGCCAAGAAGG 2408
Query 2338 TAGCTAAAAGTAGAGTGTTCTCTTAGTTAGATCGCTTTCAGCAAATCAATATCTCAGACT 2397
|||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2409 TAGCGAAGAGTAGAGTGTTCTCTTAGTTAGATATTTTTCAGCAAATCAATATCTCATAC- 2467
Query 2398 AGGAAGGTACATTCATAGGTGGGATCATTTCATTTATTTGTGGATTAAAATATAACACTC 2457
| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 2468 -G-AAGGTACATTCATAGGTGAGATCATTTCATTTATTTGTGGATTAAGATATAACACAC 2525
Query 2458 AAGTTTGGATTTTTAATTGAAGTTGTACTAACCAGCCCTGGTTTTGTTTCGTCTCGGTGT 2517
|| |||||||||||||||||| ||| |||||||||| |||||| |||||||||| |
Sbjct 2526 AACTTTGGATTTTTAATTGAAATTGAACTAACCAGCTCTGGTTCTGTTTCGTCT---T-- 2580
Query 2518 GAAATTAATGATTCATGATTTAATAG 2543
||||||||||||||||| |||||||
Sbjct 2581 -AAATTAATGATTCATGAGTTAATAG 2605
Score = 1670 bits (904), Expect = 0.0
Identities = 1022/1081 (95%), Gaps = 0/1081 (0%)
Strand=Plus/Plus
Query 1 ACGACGAATCGCAAATGGAGGCGATCAAACCACTTCCACAGGTCTCGAGCTTCTCCGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 ACGACGAATCGCAAATGGAGGCGATCAAACCACTTCCACAGGTCTCGAGCTTCTCCGCTT 92
Query 61 CAGTATTTAGCTTCCTCGATGACAAATTCAGAGACTCCACGGATCTCTCCCAGTCTCCAG 120
| ||||||||||| ||||||| || ||||| ||| |||||||||||||| || ||| | |
Sbjct 93 CGGTATTTAGCTTTCTCGATGGCAGATTCAAAGAATCCACGGATCTCTCTCATTCTACGG 152
Query 121 GTCTGGTTTCTGAGTTACAGACCGAGATTTCCGAATTGGATCAGAGATTAGCCGGATTAA 180
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 153 GTCTGGTTTCCGAGTTACAGACGGAGATTTCCGAATTGGATCAGAGATTGGCCGGATTAA 212
Query 181 ATCGCCAGCTCGAGTCCGGTCTTGCTTCTTACGCTTCGTTTTCCGATCGCGTCGGTGGTT 240
|||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 213 ATCGCCAGCTCGAGTCAGGTCTCGCTGCTTACGCTTCGTTTTCCGATCGCGTCGGTGGTC 272
Query 241 TATTTGTCGAGGTTAATGCCAAATTGGCTAATCTCTCTTCTTCTACCTCCGTTCCTCGCT 300
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 273 TATTTTTCGAGGTTAATGCCAAATTGGCTGATCTCTCTTCTTCTACCTCCGTTACTCGCT 332
Query 301 CCGCGTCAGATGGCGGAAAGGAGGAGGAGGCGACGGAGCATGTAGCTGGGGAGGAGCTTC 360
||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 333 CCGCGTCAGATAGCGGAAAGGAGGAGGAGGCGACGGAGCATGTAGCCGGAGAGGATCTTC 392
Query 361 CGTCATTAGCAAAGGAAGTAGCACAAGTTGAGTCTGTGCGGGCTTATGCTGAGACTGCAC 420
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 393 CTTCATTAGCAAAGGAAGTAGCACAAGTTGAGTCTGTGCGTGCTTATGCTGAGACTGCAC 452
Query 421 TAAAACTTGATACTCTAGTGGGTGAGATCGAGGATGCTGTGATGTCTTCTTTGAATAAAA 480
|||||||||| ||| |||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 453 TAAAACTTGACACTTTAGTTGGTGATATTGAGGATGCTGTGATGTCTTCTTTGAATAAAA 512
Query 481 ACTTGAGAACATCTCGGTCAAGCGGTTTTGAAGAAGTGCGTCTACATGCTATCAAAACAC 540
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 513 ACTTAAGAACATCTCGGTCAAGTGGTTTTGAAGAAGTGCGTCTACATGCTATTAAAACAC 572
Query 541 TTAAAACGACAGAAGAGATACTGATTTCAGTAGCTAGGAGACATCCTCGGTGGGCACGTC 600
|||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 573 TTAAAACGACAGAAGAGATACTGAGTTCAGTAGCAAAGAGACATCCTCGGTGGGCACGTC 632
Query 601 TTGTTTCTGCAGTTGATCACAGAGTAGATAGAGCCTTAGCCATGATGAGACCTCAAGCAA 660
|||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||| ||||
Sbjct 633 TTGTTTCTGCTGTTGATCATAGAGTTGATAGAGCTTTAGCTATGATGAGACCTCAGGCAA 692
Query 661 TTGCGGATTACAGAGCGTTGCTTTCTTCTCTTGGATGGCCACCTCAGCTTTCTACACTAA 720
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 693 TTGCTGATTACAGAGCGTTGCTTTCTTCTCTTCGATGGCCACCTCAGCTTTCTACACTAA 752
Query 721 CTTCAGCGAGTCTTGATTCAAAGTCAGAAAATGTCCAAAATCCGCTTTTCACCATGGAAG 780
|||| || |||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 753 CTTCGGCAAGTCTTGATTCAAAGTCAGAAAATGTTCAAAATCCGCTTTTCAACATGGAAG 812
Query 781 GGAGCCTCAAAAGTCAATACTGTGGAAATTTTCAGGCCTTGTGCAGCCTGCAGGGGTTGC 840
||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
Sbjct 813 GGAGCCTCAAAAGTCAATACTGTGGAAGTTTTCATGCCTTGTGTAGCCTGCAGGGGTTAC 872
Query 841 AGTTGCAAAGAAAGTCGCGGCAGCTTGGGAGCCATAAGGGAGAAAATGTTCTTTTCCACC 900
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 873 AGTTGCAAAGAAAGTCGCGGCAGCTTGGGATCCATAAGGGAGAAAATGTTCTTTTCCACC 932
Query 901 AGCCACTCTGGGCTGTTGAAGAGCTGGTCAACCCTCTGACAGTTGCATCTCAGCGACATT 960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AGCCACTCTGGGCTATTGAAGAGCTGGTCAACCCTCTGACAGTTGCATCTCAGCGACATT 992
Query 961 TTACAAAGTGGAGTGAAAAGCCTGAATTCATTTTTGCCCTTGTTTATAAAATCACAAGGG 1020
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 993 TTACAAAGTGGAGTGAAAAGCCAGAATTCATTTTTGCCCTTGTGTATAAAATCACAAGGG 1052
Query 1021 ACTATGTCGATTCTATGGATGAGTTGTTACAACCGCTCGTTGATGAAGCAAAACTAGCTG 1080
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1053 ACTATGTCGATTCTATGGATGAGTTGTTACAACCGCTTGTGGATGAAGCAAAACTAGCTG 1112
Query 1081 G 1081
|
Sbjct 1113 G 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126220028588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5