BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485140
Length=2909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 | chr3:176... 4324 0.0
AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 | c... 414 2e-114
AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette sub... 368 2e-100
> AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 | chr3:17629530-17633911
FORWARD LENGTH=2960
Length=2960
Score = 4324 bits (2341), Expect = 0.0
Identities = 2677/2839 (94%), Gaps = 23/2839 (1%)
Strand=Plus/Plus
Query 1 CCATCAAATCTTCTCAAATTCTCTGTGATGGCGGATTCAAGTCCTGCAAGTTTCTTGACT 60
|||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 28 CCATCAAACCTTCTCATATTCTCTGCGATGGCGGATTCTAGTCCTGCAAGTTTCTTGACT 87
Query 61 CAAGCCAATGCTTTGCTTAGGAAGAATTTAGTTTTCCAGAAACGGAACATATGGAGCAAT 120
|||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 88 CAAGCCGACGCTTTACTGAGGAAGAATTTAGTTTTCCAGAAACGGAACATATGGAGCAAC 147
Query 121 ATACGTCTCATCACGATCCCTTTCTTCCTCTGTTTACTTCTCCTTGTTGTTCAAATGCTC 180
||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 148 ATACGACTCATCACAATCCCTTTCTTTCTCTGTTTACTTCTCCTTGTTATTCAAATGCTC 207
Query 181 TTCAACACTCAATTCAACGACATCCATGGTCAATGTGGTTGCAAAGAGAAAACTTGCGAC 240
||| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
Sbjct 208 TTCGACACTCAATTCAACGACGTCCATGGTCAATGTGGCTGCAACGAGAAAACTTGCGGC 267
Query 241 TTAAGGTATTCTACTTCAGAGCAAGCAGCGTTTTGTGCCATTCCTAATCCACCACAATGG 300
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 268 TTAAGGTATTCGACTTCAGAGCAAGCAGCTTTTTGTGCCATTCCTAATCCACCACAATGG 327
Query 301 ACTCCAATGCTTCAAATTCCGGCTCCTCAATACCGAGTCGCGA-CCACATATCCTAGCCA 359
|||||| | ||||| || ||||||||| ||||||||| ||||| || |||| || |||||
Sbjct 328 ACTCCACTACTTCAGATCCCGGCTCCTGAATACCGAGCCGCGATCC-CATACCCGAGCCA 386
Query 360 TTCTTCCCCTGCAACTTTTCTCTTCACCGGGAATAATCAGTCGCTCGGAAAAATTTTAAT 419
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 387 TACTTCCCCTGCAACTTTTCTCTTCACCGGGAATAATCAGTCGCTCGGAAATATTCTAAT 446
Query 420 GGGAAATATGTATAGCGATTTATCTGAATTTGATGGAGAGTTAGCCAACTATGTCTTGGG 479
|||||||||||||||| ||| ||||| |||||||||||| |||||| | |||||||||||
Sbjct 447 GGGAAATATGTATAGCAATTCATCTGGATTTGATGGAGATTTAGCCTATTATGTCTTGGG 506
Query 480 CTCATCATCTTTCCCTGCATACACCAATTATATGGACTCTGCTTTCATATCAGATATTCC 539
|||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||
Sbjct 507 CTCATCATCTTTCCCTGCATACACCAATCATATGGACTCCGCTTTCATCTCAGATCTTCC 566
Query 540 AATCTACAACATCCAAAATGAATGCTCACCAAACTCTTCTTTCTCAATCTTAATTCACCA 599
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CATCTACAACATCCAACATGAATGCTCACCAAACTCTTCTTTCTCAATCTTAATTCACCA 626
Query 600 ATCACCTATTGCCTTCCCTAAAAAGGTAAACTGTGTCCAAGGCTTAAATCTGTGGCGGAA 659
||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 627 ATCACCTCTTGCTTTCCCTAAAGAGGTAAACTGTGTCCAAGGCTTAAATTTGTGGCGGAA 686
Query 660 TAGTTTTTCCAATGTGAACAACGAACTTTTCAAGGGTTACCGAAAAGGAAATCCGGACGA 719
||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 687 TAGTTCTTCGGATGTGAACAACGAGCTTTTCAAGGGTTACCGAAAAGGAAATCCAGACAA 746
Query 720 GAAGATCAACGAGTTTGCTGCAGCTTTTGATTTTCAGAACACAAATGGGAACAATCTCAA 779
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 747 GAAGATCAATGAGTTTGCTGGAGCTTTTGATTTTCAGAACACAAATGGGAACAATCTCAA 806
Query 780 TGTCT-GTGTTTGGTACAACTCCACCTACAAGAACGATACAGTGGTTCGACCTATGGCTC 838
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 807 TGT-TAGTGTTTGGTACAACTCCACCTACAAGAACGATACAGTGGTTCGACCGATGGCTC 865
Query 839 TGATTCGAGTCCCTCGCTTAGTTAATCAGGCATCTAATGCATATCTTGAGTTCCTAAAAG 898
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 866 TGATACGAGTCCCTCGCTTAGTTAATCTGGCATCTAATGCATATCTTGAGTTCCTAAAAG 925
Query 899 GTTCTGAGACAAAGATACTCTTTGAGTATGTCAAGGAAATGCCTAAACCAGAGACTAAAT 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GTTCTGAGACAAAGATACTCTTTGAGTATGTCAAGGAAATGCCTAAACCAGAGACTAAAC 985
Query 959 TGAGCTTAGACATCGCCTCTCTAATCGGCCCACTCTTCTTCACATGGGTCATTCTGTTGT 1018
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 986 TGAGCTTAGACATCGCCTCTCTAATCGGCCCGCTCTTCTTCACATGGGTCATTCTGTTGT 1045
Query 1019 TATTCCCTGTGATCTTAACAACACTGGTCTATGAGAAACAACAGAGGCTAAGAATCATGA 1078
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1046 TATTTCCTGTGATCTTAACAACACTGGTGTATGAGAAACAACAGAGGTTAAGAATCATGA 1105
Query 1079 TGAAAATGCAAGGACTTGGCGATGCTCCTCACTGGATAGTTTCATACACATATTTTCTCT 1138
|||||||||| |||||||| |||| |||| ||||||||||||||||||| ||||||||||
Sbjct 1106 TGAAAATGCATGGACTTGGAGATGTTCCTTACTGGATAGTTTCATACACTTATTTTCTCT 1165
Query 1139 TGATATCGATTCTATACATGTTATGCTTTGCGATATTCGGTTCTGTCATTGGGTTAAACT 1198
||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 1166 TGATATCGATTCTCTACATGTTGTGCTTTGCGATATTCGGTTCACTCATCGGGTTAAACT 1225
Query 1199 TCTTCAGGCTTAATGACTATAGTATCCAACTTGTGTTCTTCCTCATATGCATAAATCTTC 1258
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1226 TCTTTAGGCTTAATGACTATAGTATCCAACTTGTGTTCTTCTTCATATGCATAAATCTTC 1285
Query 1259 AAATATCAGTCGCCTTTTTAGCAGCTGCAATGTTTTCAGATGTTAAAACGGCTACAGTTA 1318
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1286 AAATATCAGTCGCCTTTTTAGCATCTGCAATGTTTTCAGATGTTAAAACTGCTACAGTTA 1345
Query 1319 TAGCATACATATATGTCTTTGGAACCGGGCTTCTAGGAATCTTTCTTTTCCAATTCTTCT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TAGCATACATATATGTCTTTGGAACCGGGCTTCTAGGAATCTTTCTTTTCCAATTCTTCT 1405
Query 1379 TGGAAGATCCTCTCTTCCCAAGAGGATGGATAATTGCAATGGAGTTATACCCTGGATTTT 1438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1406 TGGAAGATCCTCTCTTCCCAAGAGGATGGATAATAGCAATGGAGTTATACCCTGGATTTT 1465
Query 1439 CTTTATACCGCGGGCTATATGAGTTATCACAATCTGCATTTTCGGGAGATTACCGCGGCA 1498
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |
Sbjct 1466 CTTTATACCGCGGGCTATATGAGTTATCACAATCTGCGTTTGCGGGTGATTACCGCGGGA 1525
Query 1499 TTGATGGAATGAGATGGAGAGATTTTGAG-AATGGAATGAAAGAAGTGACTTGTATCATG 1557
|||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1526 TTGATGGAATGAAATGGAGAGATTTTG-GTAATGGAATGAAAGAAGTGACCTGTATCATG 1584
Query 1558 CTCATTGAGTGGCTGTTACTGCTTGTTTTAGCATATTACATTGATCAAATCACTTACTC- 1616
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1585 CTCATTGAGTGGCTGTTACTGCTTGGTTTAGCATATTACATTGATCAAATCATTTACTCC 1644
Query 1617 AGGGAAACATCCATTGTTCTTCCTCCTGA-AAAGCTCTTCAAAGAAGAAACAACA-TCAC 1674
||| ||||||||||||||||||||||| | ||||| |||| |||||||||||||| | |
Sbjct 1645 AGG-AAACATCCATTGTTCTTCCTCCT-ACAAAGCACTTCCAAGAAGAAACAACACTT-C 1701
Query 1675 TTCTGTCAGAGCCAAACT-TCCAAAGTTGTTATCGAAATGGAAAAATCAGATGTGTGTCA 1733
| ||| || | | ||| | |||||||||||| | || |||||||| ||||||||||||
Sbjct 1702 T-CTGACA-A-CAAAA-TATCCAAAGTTGTTGTAGAGATGGAAAAGCCAGATGTGTGTCG 1757
Query 1734 AGAGAGGGAGAAAGTAGAGCA-TCATCTACTCGAATCAACTGGAGACTGC-GCGGTTTTA 1791
||||||||||||||||||||| | |||||| |||||||| |||||| | |||||||||
Sbjct 1758 AGAGAGGGAGAAAGTAGAGCAGTG-TCTACTTAAATCAACTAGAGACT-CTGCGGTTTTA 1815
Query 1792 TGCAACAACCTCAAGAAGGTGTACTCGGGTAAGGACGGTAATCCTCAGAAACTCGCGGTT 1851
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1816 TGCAATAATCTCAAGAAGGTGTACTCGGGTAAGGACGGTAATCCTCAGAAGCTCGCGGTT 1875
Query 1852 AGAGGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTTGGTCCTAATGGA 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 AGAGGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTTGGTCCTAATGGA 1935
Query 1912 GCAGGCAAAACTTCTTTCATCAATATGATGACAGGAATCATTAAACCATCATCTGGCACA 1971
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1936 GCAGGCAAAACCTCTTTCATCAACATGATGACAGGAATCATCAAACCATCGTCTGGCACA 1995
Query 1972 GCATTTGTCCAAGGTCTTGACATACTAACCGATATGGACCGGATATATACAACAATTGGA 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 GCATTTGTCCAAGGTCTTGACATACTAACCGATATGGACCGGATATATACAACAATTGGA 2055
Query 2032 GTCTGTCCACAACATGATCTTCTGTGGGAGAAATTGAGTGGAAGGGAACATCTACTGTTT 2091
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2056 GTCTGTCCACAACATGATCTTCTGTGGGAGAAGTTGAGTGGAAGGGAACATCTACTGTTC 2115
Query 2092 TATGGAAGGCTCAAGAATCTCAAAGGTTCTGTCTTAACACAAGCTGTCGAAGAGTCGCTT 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2116 TATGGAAGGCTCAAGAATCTCAAAGGTTCTGTCTTAACACAAGCTGTCGAAGAGTCGCTT 2175
Query 2152 CGCAGTGTCAACCTTTTCCATGGAGGGATTGGCGACAAACAAGTCGGTAAATACAGCGGA 2211
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 2176 CGCAGTGTCAACCTTTTCCATGGAGGGATTGGTGACAAACAAGTCAGTAAATACAGTGGA 2235
Query 2212 GGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCCAAAAGTTGTTTAC 2271
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2236 GGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCCCAAAGTTGTTTAC 2295
Query 2272 ATGGATGAGCCAAGTACTGGGCTTGATCCAGCCTCGAGGAAAAGCTTATGGGATGTAGTG 2331
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2296 ATGGATGAGCCAAGTACCGGGCTAGATCCAGCCTCGAGGAAGAGCTTATGGGATGTAGTG 2355
Query 2332 AAACGGGCTAAGCGAAAAGGGGCGATAATACTCACTACACATTCAATGGAAGAAGCTGAA 2391
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2356 AAACGGGCTAAGCGAAAAGGGGCGATAATACTCACCACACATTCAATGGAAGAAGCTGAA 2415
Query 2392 ATTTTATGTGACCGTATTGGAATTTTCGTCGATGGTAGTTTGCAATGCATAGGCAATCCA 2451
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2416 ATTTTGTGTGACCGTATAGGAATTTTCGTCGATGGTAGTTTGCAATGCATTGGCAATCCA 2475
Query 2452 AAGGAGTTGAAGAGTCGATATGGAGGATCCTATGTATTGACTATGACAACCTCGGAGGAA 2511
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2476 AAGGAGTTGAAGAGTCGATATGGAGGATCCTATGTATTGACTGTGACAACCTCGGAGGAA 2535
Query 2512 CATGAGAAAGAAGTGGAGCAATTAGTGCATAACATCTCTATGAATGCAAAGAAGATATAT 2571
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2536 CATGAGAAAGAAGTAGAGCAATTAGTGCATAACATCTCTACGAATGCAAAGAAGATATAT 2595
Query 2572 CGAACCGCGGGGACTCAGAAGTTTGAGCTGCCAAAGCAGGAGGTGAAGATTGGTGAGGTG 2631
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2596 CGAACCGCGGGGACTCAGAAGTTTGAGCTGCCAAAGCAAGAGGTGAAGATTGGTGAGGTG 2655
Query 2632 TTTCAGGCGGTGGAGAAGGCGAAGACAATGTTTCCGGTAGTTGCTTGGGGACTTGCAGAC 2691
||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2656 TTTAAGGCTTTGGAGAAGGCGAAGACAATGTTTCCAGTAGTTGCTTGGGGACTTGCAGAC 2715
Query 2692 ACAACTCTTGAAGATGTCTTTATAAAGGTTGCACAAACTTCTTAACTAACAACTCTTTTG 2751
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2716 ACAACTCTTGAAGATGTCTTTATAAAGGTTGCTCAAACTTCTTAACTAACAACTCTTTTG 2775
Query 2752 AATGTTTTCTTTTGATCAATTTCAATATTTTCT-TCATCTTATGTCAAACTCAAAGTCAG 2810
|||| || ||| ||||||| ||||| |||||| | |||||||||||| |||||| |||
Sbjct 2776 AATGATTCCTTCAGATCAATCTCAATCTTTTCTAT-ATCTTATGTCAAGCTCAAAATCAC 2834
Query 2811 AAACTATATTTCATATAAC 2829
|||||||||||||||||||
Sbjct 2835 AAACTATATTTCATATAAC 2853
Score = 115 bits (62), Expect = 2e-24
Identities = 75/81 (93%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 2830 AAAATCATTTATTTCCGTAAATAGTTAATATGAT-TTTCTATTCTAAAAAGGGAAACAAT 2888
|||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||
Sbjct 2880 AAAATCATTTATTTCCGTAAATAGTTAATACGAGCTTTCGAGTCTAAAAAGGGAAACAAT 2939
Query 2889 GGATAGACTTCAATTAGACGT 2909
|||||||||||| ||||||||
Sbjct 2940 GGATAGACTTCATTTAGACGT 2960
> AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 |
chr3:17611787-17616639 FORWARD LENGTH=2619
Length=2619
Score = 414 bits (224), Expect = 2e-114
Identities = 740/979 (76%), Gaps = 76/979 (8%)
Strand=Plus/Plus
Query 1783 GCGGTTTTATGCAACAACCTCAAGAAGGTGTACT-CGGGTAAGGACGGTAATCCTCAGAA 1841
||| || |||| |||| || ||||||||||| | | ||| ||| || || || || ||
Sbjct 1645 GCGATTGTATGTGACAATCTGAAGAAGGTGTA-TCCATGTAGGGATGGGAACCCACAAAA 1703
Query 1842 ACTCGCGGTTAGAGGATTATCTCTTGCTTTACC-TCAAGGAGAATGCTTTGGCATGCTT- 1899
| | || ||| | |||||||||||||| | || || ||||||||||||||||||| ||
Sbjct 1704 AATGGCAGTTCGCGGATTATCTCTTGCAGTGCCTTC-AGGAGAATGCTTTGGCATG-TTA 1761
Query 1900 GGTCCTAATGGAGCAGGCAAAACTTCTTTCATCAATATGATGACAGGAATCATTAAACCA 1959
|| || ||||| || || ||||| || ||||||||||||||||| || | || ||||||
Sbjct 1762 GGGCCCAATGGTGCCGGAAAAACCTCCTTCATCAATATGATGACTGGGCTTATGAAACCA 1821
Query 1960 TCATCTGGCACAGCATTTGTCCAAGGTCTT-GACATACT--AACCGATATGGACCGGA-T 2015
| ||||| |||| ||||| || ||| || || ||| | || || ||||| | | |
Sbjct 1822 ACGTCTGGGGCAGCCTTTGTTCATGGT-TTGGATATA-TGCAA-GGACATGGA-C--ATT 1875
Query 2016 ATATACAACA--ATTGGAGTCTGTCCACAACATGATCTT-CTGTGGGAGAA-ATTGAGTG 2071
|||||| || ||||| || |||||||| ||||| ||| || ||||| || ||| |
Sbjct 1876 GTATACACCAGCATTGGTGTTTGTCCACAGCATGA-CTTGCTCTGGGA-AACGCTGACAG 1933
Query 2072 GAAGGGAACATCTACTGTTTTATGGAAGGCTCAAGAATCTCAAAGGTTCTG-TCTTAACA 2130
||||||||||| | || |||||||| || || |||||||||||||| |||| ||| ||
Sbjct 1934 GAAGGGAACATTTGCTCTTTTATGGGAGACTAAAGAATCTCAAAGGCTCTGATCTCGAC- 1992
Query 2131 CAAGCTGTCGAAGAGTCGCTT-CGCAGTGTCAACCT-TTTCCATGGAGGGA-TTGGC-GA 2186
||||| || ||||| || ||| | ||||| ||||| ||| | ||| ||| || || ||
Sbjct 1993 CAAGCCGTAGAAGAATCTCTTAAG-AGTGTGAACCTATTT-CGTGG-TGGAGTT-GCTGA 2048
Query 2187 CAAACAAGTC-GGTAAATACAGCGGAGGGATGAAGA-GACGGCTCAGCGTCGCTATTTCT 2244
|||| | | || ||||| || ||||| ||||| | || | || ||||| || |||||
Sbjct 2049 TAAACCTG-CTGGGAAATATAGTGGAGGCATGAAAAGGA-GACTAAGCGTAGCAATTTCA 2106
Query 2245 CTTATAGGAAGCCCAAAAGTTGTTTACATGGATGAGCCAAGTACTGGGCTTGATCCAGCC 2304
||||| || || || || || ||||| |||||||||||||| || || |||||||| ||
Sbjct 2107 CTTATTGGGAGTCCTAAGGTGGTTTATATGGATGAGCCAAGCACAGGACTTGATCCGGCT 2166
Query 2305 TCGAGGAA-AAGCTTATGGGA-TG-TAGTGAAACGGGCTAAGCGAAA--A-GGGGCGATA 2358
|| | ||| ||||||| ||| | | | ||||| || || ||| | ||||||
Sbjct 2167 TC-AAGAAGGAGCTTAT-GGACAGCCA-TCAAACGTGC-AA--AAAACCACACTGCGATA 2220
Query 2359 ATACTCACTACACATTCAATGGAAGAAGCTGAAATTT-TATGTGACCGTATT-GGAATTT 2416
|| ||||| || || |||||||||||||| | | ||| |||||||||| ||| || ||||
Sbjct 2221 ATCCTCACGACTCACTCAATGGAAGAAGCAG-AGTTTCTATGTGACCG-ATTAGGCATTT 2278
Query 2417 TCGTCGATGGTAGTTTGCAATGCATAGGCAATCCAAAGGAGTTGAAGAGTC--GATATGG 2474
| || || || || || |||||| |||| |||||||| ||| | || || | | |||||
Sbjct 2279 TTGTAGACGGAAGGTTACAATGCGTAGGGAATCCAAAAGAGCT-AA-AGGCAAGGTATGG 2336
Query 2475 AGGATCCTATGTATTGACTATGACAAC-CTCGGAGGAACATGAGAAA-GAAGTGGAGCA- 2531
||||| ||||| || ||||||||||| | | ||||||||| ||| || |||||| |
Sbjct 2337 TGGATCTTATGTTTTAACTATGACAACAC-CATCGGAACATGA-AAAGGATGTGGAG-AT 2393
Query 2532 ATTAGTGCATA-ACATCTCTATGAATGCAAAGAAGATATATCGA-ACCGCGGGGACTCAG 2589
|| || || | | | ||| || || ||||| ||||||| | | ||| ||||| ||
Sbjct 2394 GTTGGTTCA-AGATGTTTCTCCAAACGCCAAGAAAATATATC-ACATCGCAGGGACACAA 2451
Query 2590 AAGTTTGAGCTGCC-AAAGCAGGAGGTGAAGAT-TGGTGAGGTGTTTCAGGCGGTGGAGA 2647
|| |||||| | || |||| |||| || ||| | | || |||||||||||||||||||
Sbjct 2452 AAATTTGAGATACCAAAAG-AGGAAGTTCGGATCTCG-GAAGTGTTTCAGGCGGTGGAGA 2509
Query 2648 AGGCGAA-GACAATGTTTCCGGTAG-TTGCTTGGGGACTTGCAGACACAACTCTTGAAGA 2705
|||| || |||||| ||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 2510 AGGCAAAGGACAAT-TTTAGGGT-GTTTGCTTGGGGACTTGCAGACACAACTCTTGAAGA 2567
Query 2706 TGTCTTT-ATAAAGGTTGC 2723
|| ||| || ||||||||
Sbjct 2568 CGT-TTTCATTAAGGTTGC 2585
> AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette subfamily
A4 | chr3:17606427-17610889 FORWARD LENGTH=2844
Length=2844
Score = 368 bits (199), Expect = 2e-100
Identities = 721/964 (75%), Gaps = 72/964 (7%)
Strand=Plus/Plus
Query 1796 ACAACCTCAAGAAGGTGTACT-CGGGTAAGGACGGTAATCCTCAGAAACTCGCGGTTAGA 1854
|||| || || |||||||| | | |||| ||| || || || | ||| | || ||| ||
Sbjct 1883 ACAAGCTGAAAAAGGTGTA-TCCTGGTAGGGATGGGAACCCACCTAAAATGGCCGTTGGA 1941
Query 1855 GGATTATCTCTTGCTTTACCTCAAGGAGAATGCTTTGGCATGCTT-GGTCCTAATGGAGC 1913
|| |||||| | ||| |||||| ||| ||||| ||||||||| || || || || || ||
Sbjct 1942 GGGTTATCTATAGCTGTACCTCCAGGCGAATGTTTTGGCATG-TTAGGCCCCAACGGTGC 2000
Query 1914 AGGCAAAACTTCTTTCATCAATATGATGACAGGAATCA-TTAAACCATCATCTGGCACAG 1972
||| || || || ||||||||||||||||| || | | | |||||| ||||||| ||||
Sbjct 2001 AGGGAAGACATCATTCATCAATATGATGACTGGGCT-AGTGAAACCAACATCTGGAACAG 2059
Query 1973 CAT-TTGTCCAAGGTCTT-GACATACTAACC--GATATGGACCGGA-TATATAC-AACAA 2026
| | |||| || || || |||||| | || |||||||| | | |||| || | | |
Sbjct 2060 C-TCTTGTTGAAAGT-TTGGACATA-T-GCCAGGATATGGA-CAAAGTATACACTAGC-A 2113
Query 2027 TTGGAGTCTGTCCACAACATGATCTT-CTGTGGGAGAA-ATTGAGTGGAAGGGAACATCT 2084
| || || || |||||||| || ||| || ||||| || | | | |||||||||||| |
Sbjct 2114 TGGGTGTTTGCCCACAACACGA-CTTGCTATGGGA-AACACTAACAGGAAGGGAACATTT 2171
Query 2085 ACTGTTTTATGGAAGGCTCAAGAATCTCAAAGGTTCTG-TCTTAACACAAGCTGTCGAAG 2143
|| ||||| ||||| || |||||||||||||| |||| ||| ||| |||||| | ||||
Sbjct 2172 GCTCTTTTACGGAAGACTTAAGAATCTCAAAGGCTCTGATCTCAAC-CAAGCTATAGAAG 2230
Query 2144 AGTCGCTT-CGCAGTGTCAACCTTTTCCATG-G-AGGGATTGGC-GACAAACAAGTC-GG 2198
|||| ||| | ||||| |||| | | || | | |||| || || || |||| | | ||
Sbjct 2231 AGTCTCTTAAG-AGTGTGAACC-TAT-CACGCGAAGGGGTT-GCTGATAAACCTG-CTGG 2285
Query 2199 TAAATACAGCGGAGGGATGAAGAGACGGCTCAGCGTCGCTATTTCTCTTATAGGAAGCCC 2258
||||| || ||||| ||||| || || || || || |||||||| ||||| ||||| ||
Sbjct 2286 GAAATATAGTGGAGGCATGAAAAGGCGACTAAGTGTAGCTATTTCACTTATTGGAAGTCC 2345
Query 2259 AAAAGTTGTTTACATGGATGAGCCAAGTACTGGGCTTGATCCAGCCTCGAGGAA-AAGCT 2317
|| || ||||| |||||||||||||| || || ||||||||||| || | ||| |||
Sbjct 2346 TAAGGTGGTTTATATGGATGAGCCAAGCACAGGACTTGATCCAGCTTC-AAGAAGGAGCC 2404
Query 2318 TATGGGA-TG-TAGTGAAACGG-GCTAAGCGAAA-A-GGGGCGATAATACTCACTACACA 2372
||| ||| | || | ||| || || || ||| | || ||||| |||||||| ||
Sbjct 2405 TAT-GGACAGCTA-TCAAA-GGCGC-AA-AAAAACACACTGCAATAATTCTCACTACTCA 2459
Query 2373 TTCAATGGAAGAAGCTGAAATTT-TATGTGACCGTATT-GGAATTTTCGTCGATGGTAGT 2430
|||||||||||||| | | ||| | || ||| | ||| || ||||| || || || ||
Sbjct 2460 CTCAATGGAAGAAGCAG-AGTTTCTCTGCGACAG-ATTAGGCATTTTTGTAGACGGAAGG 2517
Query 2431 TTGCAATGCATAGGCAATCCAAAGGAGTTGAAGAGTC--GATATGGAGGATCCTATGTAT 2488
|| |||||| |||| |||||||| ||| | || || | | ||||| ||||| ||||| |
Sbjct 2518 TTACAATGCGTAGGGAATCCAAAAGAGCT-AA-AGGCAAGGTATGGTGGATCTTATGTGT 2575
Query 2489 TGACTATGACAACCTC-GGAGGAACATGAGAAAGAAGTGGAGCA-ATTAGTGCATA-ACA 2545
| || |||||||| || | |||||||| ||||| |||||| | ||| | || | |
Sbjct 2576 TAACAATGACAACATCATCA-GAACATGAAAAAGATGTGGAG-ATGTTAATTCA-AGATG 2632
Query 2546 TCTCTATGAATGCAAAGAAGATATATCGA-ACCGCGGGGACTCAGAAGTTTGAGCTGCC- 2603
| ||| || || ||||| ||||||| | | ||| ||||| || || |||||| | ||
Sbjct 2633 TTTCTCCAAACGCCAAGAAAATATATC-ACATCGCAGGGACACAAAAATTTGAGATCCCA 2691
Query 2604 AAAGCAGGAGGTGAAGATTGGTGAGGTGTTTCAGGCGGTGGAGAAGGC-GAA-GACAATG 2661
|||| | || || ||| | || ||||||| || ||||||||||| || || |||
Sbjct 2692 AAAG-ACGAAGTTCGGATCGCAGAATTGTTTCAAGCTGTGGAGAAGGCAAAAGGA-AAT- 2748
Query 2662 TTTCCGGTAG-TTGCTTGGGGACTTGCAGACACAACTCTTGAAGATGTCTTT-ATAAAGG 2719
||| ||| | ||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 2749 TTTAGGGT-GTTTGCTTGGGGACTTGCAGACACAACTCTTGAAGATGT-TTTCATTAAGG 2806
Query 2720 TTGC 2723
||||
Sbjct 2807 TTGC 2810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144581129726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5