BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485145
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47820.1 | Symbols: PUB39 | PLANT U-BOX 39 | chr3:17644428-1... 2375 0.0
AT5G62560.1 | Symbols: | RING/U-box superfamily protein with A... 806 0.0
> AT3G47820.1 | Symbols: PUB39 | PLANT U-BOX 39 | chr3:17644428-17646160
FORWARD LENGTH=1733
Length=1733
Score = 2375 bits (1286), Expect = 0.0
Identities = 1462/1547 (95%), Gaps = 12/1547 (1%)
Strand=Plus/Plus
Query 1 CTATGCCACAACACAACAGCCCCGGCGAAACCCCGACGGAGTTCCTCTGTCCCATCACCG 60
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 5 CTATGCCACAACACAACAGCCCCGGCGAAACTCCAACAGAGTTCCTCTGTCCCATCACCG 64
Query 61 GATTTTTGATGTCAGACCCAGTCGTCGTCGCTTCAGGTCAAACATTTGAACGTATCTCCG 120
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 65 GCTTTTTGATGTCAGACCCCGTCGTCGTCGCTTCTGGTCAAACATTTGAACGTATCTCCG 124
Query 121 TCCAAGTTTGTCGGAATCTCGGATTTGCACCGAAGCTTCACGACGGAACTCAACCTGATT 180
|||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| ||||
Sbjct 125 TCCAAGTTTGCCGGAATCTCAGTTTTGCTCCAAAGCTTCACGACGGAACTCAACCAGATT 184
Query 181 TATCCACTGTAATCCCAAATCTCGCCATGAAATCAACAATTCTCAGCTGGTGCGATAGAA 240
||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct 185 TATCCACCGTAATCCCAAATCTCGCCATGAAATCAACAATTTTAAGCTGGTGCGATCGGA 244
Query 241 ACAAAATGGAGCATCCTCGTCCTCCTGATTACGCTTACGTTGAAGGTGTGGTTCGTACCC 300
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 245 ACAAAATGGAACATCCTCGTCCTCCTGATTACGCTTACGTCGAAGGTGTTGTTCGTACCC 304
Query 301 GAATGGATTCAAGTCCTCCGGGTACGGGTCATCGGATCGCTAAATCGGAAATCTTACCTC 360
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 305 GAATGGATTCACTTCCTCCGGGTTCGGGTCATCGGATCGCTAAATCCGAAATCTTACCAC 364
Query 361 CGGTGGCTGAGAATTCAAATTCGAATTCGGATTCAGATTATGAATCTGTAATGGGAGCGA 420
|||||||||||||||||||||| || |||||||||| || || || ||||||||||
Sbjct 365 CGGTGGCTGAGAATTCAAATTC-AA-----ATTCAGATTACGATTCCGTGATGGGAGCGA 418
Query 421 TTCGTTCTCGTTCAAGAACTTCAATATCGTCAAGC-ACTTCTCTTCCACTTCACCAAACC 479
|||| ||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 419 TTCGATCTCGTTCAAGGACTTCATTATCGTCAA-CTACTTCTCTTCCACTTCACCAAACC 477
Query 480 CGACCCGTTAATCACTCGACCCGAATCCCTAA-CTCATTCTCTACATCGGATTATTCATC 538
|||||| |||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 478 CGACCCATTAATCACTCGACCCGGAT-CCAAAGCTCATTCTCTACATCGGATTATTCATC 536
Query 539 TTTTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTAAGC-AGCGTAGACA 597
||||||||||||||||||||||||||||||||||||||||||||| | | || || ||||
Sbjct 537 TTTTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTGA-CAAGTGTTGACA 595
Query 598 CAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAACGAGAGCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 CAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAACGAGACCA 655
Query 658 CGAGAATCTCTCTTTGCACTGATCGGATTCTCTCATTACTCCGATCTCTGATCGTTTCAC 717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGAGAATCTCTCTTTGTACTGATCGGATTCTCTCATTACTCCGATCTCTGATCGTTTCAC 715
Query 718 GGTACAACATCGTGCAAACAAACGCCGCCGCATCGATTGTTAATCTCTCGTTAGAGAAAC 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 GGTACAACATCGTGCAAACAAACGCCGCCGCGTCGATTGTTAATCTCTCGTTAGAGAAAC 775
Query 778 CTAACAAATTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATCGATGTTTTGAAAT 837
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 776 CTAACAAATTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATTGATGTTTTGAAAT 835
Query 838 CGGGATCAACGGAGGCGCAAGAACATGTAATCGGAGCTTTGTTTAGTTTAGCGGTTGAGG 897
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 836 CGGGATCAACGGAGGCGCAAGAGCATGTAATCGGAGCTTTGTTTAGTTTAGCGGTTGAAG 895
Query 898 AAGAGAACAAGATGGTGATCGGGGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTC 957
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGAGAACAAGATGGTGATCGGAGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTC 955
Query 958 GATCATCGGAGAGTGAGAGAGCGCGTCAAGACGCGGCGCTTGCGCTTTATCATCTGTCGT 1017
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 956 GTTCATCGGAGAGTGAGAGAGCTCGTCAAGACGCGGCGCTTGCGCTTTATCATTTGTCGT 1015
Query 1018 TGATTCCGAATAACCGAATTAGGCTGGTTAAAGCCGGTGCGGTGCCGATGTTGCTGTCTA 1077
|||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1016 TGATTCCGAATAACCGAAGTAGGCTGGTTAAAGCCGGTGCAGTGCCGATGATGCTGTCTA 1075
Query 1078 TGATCAGATCCGGTGAATCGGCGAGCCGGATTCTTTTGTTACTATGTAATCTTGCGGCTT 1137
|||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||
Sbjct 1076 TGATCAGATCCGGTGAATCGGCGAGCAGGATTCTTTTATTACTGTGTAATCTGGCGGCTT 1135
Query 1138 GTTCGGAAGGGAAAGGAGCGATGCTTGACGGGAACGCGGTGTCGATACTGGTCGGGAAAT 1197
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1136 GTTCGGAAGGAAAAGGTGCGATGCTTGACGGGAATGCGGTGTCGATACTGGTTGGGAAAT 1195
Query 1198 TGCGAGAAGGTGGAGGAGGAGAGTCAGACGCGGCGGCGCGTGAGAATTGCGTTGGGGCTT 1257
|||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 TGCGAGAAAGTGGAGGAGCTGAGTCAGACGCGGCGGCGCGTGAGAATTGCGTCGGGGCTT 1255
Query 1258 TGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATTGGCGAGTGAGGCGGGTGCGG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATTGGCGAGTGAGGCGGGTGCGG 1315
Query 1318 AGGAGATTTTGACGGAAATTGTGGAGAGCGAGAGCGGAAGCGGGCGGTTGAAGGAGAAAG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGGAGATTTTGACGGAAATTGTGGAGAGCGAGAGCGGAAGCGGGCGGTTGAAGGAGAAAG 1375
Query 1378 CGGCAAAGATTCTGCAGGCATTGAGAGGCGGAGGGAATGATTTTGGAGAAGGTGCGGAGG 1437
| |||||||||| ||| |||||||||||||||||| ||| || || ||||| |||||||
Sbjct 1376 CTTCAAAGATTCTACAGACATTGAGAGGCGGAGGGAGTGAATTCGGTGAAGGAGCGGAGG 1435
Query 1438 CGCGTGAGTGGAACCGTATGTTGGAAGCGAGTGGGCTAAGTCGTTCTCAGTTTCAACAAG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CGCGTGAGTGGAACCGTATGTTGGAAGCGAGTGGGCTAAGTCGTTCTCAGTTTCAACAAG 1495
Query 1498 GAGGGCAAAAAGGGGGTTTCGCTTATTCCTCTCAGTTTTAGCTCTAT 1544
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1496 GAGGGCAAAAAGGGGGTTTTGCTTATTCCTCTCAGTTTTAGCTCTAT 1542
> AT5G62560.1 | Symbols: | RING/U-box superfamily protein with
ARM repeat domain | chr5:25109991-25112001 FORWARD LENGTH=2011
Length=2011
Score = 806 bits (436), Expect = 0.0
Identities = 845/1035 (82%), Gaps = 58/1035 (6%)
Strand=Plus/Plus
Query 534 TCA-TCTT-TTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTAAGCAGCG 591
||| |||| || |||||||||||||||||||||||||||||| ||| ||||| || || |
Sbjct 760 TCACTCTTCTT-CTCCGATGTCACCGGAAGAAGAAGAGATCTTCAATAAATTGAG-AG-G 816
Query 592 TA--GACACAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAA 649
|| |||| |||| |||||||||||| |||||| || ||||||| ||||||||| |
Sbjct 817 TACCGACATTTTCGACCACGAGCAAGGTTTGATTCTTCTTAGGAAGATGACGAGATCTAG 876
Query 650 CG-AGAGC-ACGAGAATCTCTCTTTGCACTGATCGGATTCTCTCATTACTCCGATCTCTG 707
| ||| | || | | || ||||| || |||||||||||||| || |||||||| |||
Sbjct 877 TGAAGATCTTCG-G-GTTTCGCTTTGTACAGATCGGATTCTCTCTTTTCTCCGATCGCTG 934
Query 708 ATCGTTTCACGGTACAA-CATCGTGCAAACAAACGCCGCCGCATCGATTGTTAATCTCTC 766
| |||||||||||||| | | || || || |||||||| || ||| | |||||||||||
Sbjct 935 CTTGTTTCACGGTACAATC-TTGTTCAGACTAACGCCGCTGCTTCGGTGGTTAATCTCTC 993
Query 767 GTTAGAGAAACCTAACAAA-TTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATCG 825
||| || |||| |||||| || || ||||||||||||||||| |||||| |||||||||
Sbjct 994 GTTGGAAAAACAGAACAAAGTT-AAGATCGTACGGTCAGGATTTGTTCCTCTGTTGATCG 1052
Query 826 ATGTTTTGAAATCGGGATCAACGGAGGCGCAAGAACATGTAATCGGAGCTTTGTTTAGTT 885
||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct 1053 ATGTTTTGAAATCGGGAACGACGGAGGCGCAGGAACATGTTGCCGGAGCTTTGTTTAGTT 1112
Query 886 TAGCGGTT-GAGGAAGAGAACAAGATGGTGATCGGGGTTCTTGGTGCGGTGGAGCCGCTT 944
| || ||| || || |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1113 TGGC-GTTGGAAGATGAGAACAAAATGGTGATCGGAGTTCTTGGTGCGGTGGAGCCGCTT 1171
Query 945 CTTCACGCGCTTCGATCATCGGAGAGTGAGAGAGCGCGTCAAGACGCGGCGCTTGCGCTT 1004
|||||||||||||| || ||||||||||| |||||||| ||||| || || |||||||||
Sbjct 1172 CTTCACGCGCTTCGGTCGTCGGAGAGTGAAAGAGCGCGGCAAGATGCAGCTCTTGCGCTT 1231
Query 1005 TATCATCTGTCGTTGATTCCGAATAACCGAATTAGGCTGGTTAAAGCCGGTGCGGTGCCG 1064
|| ||| |||| ||||||||| || ||| ||||||||||| ||| ||||||||||||
Sbjct 1232 TACCATTTGTCCCTGATTCCGAGCAATAGAACTAGGCTGGTTAGAGCTGGTGCGGTGCCG 1291
Query 1065 A-TGTTGCTGTCTATGATCAGATCCGGTGAATCGGCGAGCCGGATTCTTT-TGTTACTAT 1122
| | | ||| || ||| | ||||| ||||| ||| | ||||||||| || || ||||||
Sbjct 1292 ACTCT-GCTTTCGATGGTAAGATCGGGTGATTCGACTAGCCGGATT-TTGCTGGTACTAT 1349
Query 1123 GTAATCTTGCGGCTTGTTCGGAAGGGAAAGGAGCGATGCTT-GACGGGAACGCGGTGTCG 1181
|||| || || |||||| | || || ||||| |||||| || || || ||||||||| ||
Sbjct 1350 GTAACCTGGCCGCTTGTCCAGACGGAAAAGGTGCGATG-TTAGATGGAAACGCGGTGGCG 1408
Query 1182 ATACTGGTCGGGAAA-TTGCGAGAAGGT-GGAGGAGGAGAGTCAGACGCGGCGGCGCGTG 1239
|| |||| ||||| || |||||| | ||||| || || ||||| | | |||||||||
Sbjct 1409 ATTTTGGTAGGGAAGCTTA-GAGAAG-TCGGAGGTGGTGATTCAGA-G-G-CGGCGCGTG 1463
Query 1240 AGAATTGCGTTGG-GGCTT-TGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATT 1297
||||||| || || || || ||||||||||| || ||||||| |||||||||| || ||
Sbjct 1464 AGAATTGTGT-GGCGG-TTCTGTTGACGTTGTGTCAAGGGAATTTGAGGTTTAGGGGGTT 1521
Query 1298 GGCGAGTGAGGCGGGTGCGGAGGAGATT-TTGACGGAAATTGTGGAGAGCGAGA-GCGGA 1355
||||||||||||||| |||||||| | | |||| |||| ||||| || || | | |||
Sbjct 1522 GGCGAGTGAGGCGGGAGCGGAGGA-AGTGTTGATGGAA---GTGGA-AGAGA-ATG-GGA 1574
Query 1356 AGCGGGCGGTTGAAGGAGAAAGCGGCAAAGATTCTGCAGGC-ATT-GAG-AGG---CGGA 1409
| | ||| |||||||||| ||| | |||||||||| ||| || ||| ||| ||||
Sbjct 1575 AT-GAACGGGTGAAGGAGAAGGCGTCGAAGATTCTGCTGGCGATGAGAGGAGGAGGCGGA 1633
Query 1410 GG-GA-A-TGATTTTGGAGAAGGTGCGGAGGCGCGTGAGTGGAACCGTATG-TTGGAAGC 1465
|| || | ||| ||||| ||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 1634 GGAGAGAGTGAGTTTGGGGAAAATGCGGAGGCGCGTGAGTGGAACCGTATGCTTG-AAGC 1692
Query 1466 GAGTGGGCTAAGTCGTTCTCAGTTTCAACAAGGAGGGCAAAAAGGGGGTTTCGCTTATTC 1525
|| |||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1693 GACTGGGCTAAGTCGGACTCAGTTTCAA---GGAGGGCAAAATGGGGGTTTTGCTTATTC 1749
Query 1526 CTCTCAGTTTTAGCT 1540
||| ||||| |||||
Sbjct 1750 CTCCCAGTTCTAGCT 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5