BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485149
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1764 0.0
> AT3G47850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to
57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa
- 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes
- 7 (source: NCBI BLink). | chr3:17654072-17656013 REVERSE
LENGTH=1256
Length=1256
Score = 1764 bits (955), Expect = 0.0
Identities = 1163/1262 (92%), Gaps = 19/1262 (2%)
Strand=Plus/Plus
Query 1 AGAGCAAAACGTCATGCAAGTCGAAATCTCATCGTCATATGCTCACGGAAGCAGAAGACA 60
|||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||| ||
Sbjct 1 AGAGCAAAACGTCATGCAAGTCGAAATCCCATCGCCGTATGATCACGGAAGCAGAAGGCA 60
Query 61 ACGGCGAATTCGACGCACGGAAGAAACCCAAAAGCAGAAGACGATGGTGGCGATATCAAT 120
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 61 ACGGCGAATTCGACGAACGGAAGAAACCCAAAAGCAGAAGAAGATGGTGGCGATATCTAT 120
Query 121 GTACAGAGGCAACCTTCACAAAGTTCCCGATGTACCTCGCCGGTGGAGAATGCCTGACCA 180
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 121 GTACAGAGGCAACCTTCACAAAGTTCCCGACGTACCTCGCCGGTGGATAATGCCTGACCG 180
Query 181 TAATCTCTCTTTCAAGGATTTCAAATCTCTCCTTCATCGCCGTAAACGAGCCCTCTCTCG 240
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 181 TAATCTCTCTTTCAAGGATTTCAAATCTCTTCTTCATCGCCGTAAAAAAGCCCTTTCTCG 240
Query 241 TCTCCCCCTTAATTCCAACCCTAATTTGAATCTCAGCGTCAAGACTGAGTTGGTTACCGA 300
|||||||| || |||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 241 TCTCCCCC----TT--AACCCTAATTTGAACCTTAGCGTCAAGACTGAGTTGGTTACTGA 294
Query 301 TCAGGAGAATCCGATTCTTCCATCTGAAGGGAACGCTTCTTCTGGGAAGCAGAAGCTAGT 360
|||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 295 TCAGGAGAATCCAATTCTTCCATCTGAAGCGAACGGTTCTTCTGGGAAGCAGAAGCTATT 354
Query 361 TGATGTGAAGAGAGAGGTGATAGGTGGGAATCGGGTTAAGGAAGATGAGAACAACGACAG 420
||| || |||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct 355 TGAGGTAAAGAGAGAGGAGATTTGTGGGAATCGGGTTAAGGGAGATGAGAACAACGACAG 414
Query 421 AGGTTTTGAAGGAGCTCGATCAGACGGTGGAGATCGTCCAGGGAGAGTGACGGAATTGAA 480
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 415 AGGTTTTGAAGGAGCTCGATCAGACGGTGGAGATCGTCCCGGGAGAGTGACGGAATCAAA 474
Query 481 GGAAACCGATTATGTGCCACAAAAGGATGTGGCGAAGGAGGAAGAGGCGAATGAAACAGC 540
|||||||||| |||||||||| ||| ||| ||| |||||||| ||| |||||||| ||||
Sbjct 475 GGAAACCGATAATGTGCCACACAAGTATGCGGCCAAGGAGGAGGAGACGAATGAAGCAGC 534
Query 541 TGAAAAAGTACCAAGCGAGATAGAGAAAAAACAGAAAGAAGTAGAGGAGAGATTACAAGT 600
|||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||
Sbjct 535 TGAAAAAGTACCAAGCGAGACAGAGTTAAAACGGAAAGAAGTGGAGGAGAGATTACAAGT 594
Query 601 TTTGAATGCAAAGAAACACAATCTAGTCCAAGTGCTTAAGCAGATTTTAAATGCTGAGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTTGAATGCAAAGAAACACAATCTAGTCCAAGTGCTTAAGCAGATTTTAAATGCTGAGGA 654
Query 661 AGAATTGAAAAGACGCGGCTGCATGCAACAGCAAGGAACGACAGCAGCGACTCGCCCTGC 720
|||||||||||||||| ||| ||||||||| |||||||| || | ||| ||||| ||| |
Sbjct 655 AGAATTGAAAAGACGCAGCTACATGCAACAACAAGGAACCACCGTAGCCACTCGTCCTTC 714
Query 721 CCTTCCACTCCATGTTGATGTCTCTAATGACTCAGGAGGTAATGCTGGTACTCACATGGA 780
|||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 715 TCTTCCACTCCATGTGGATGTCTCGAATGACTCAGGAGGTAATGTTGGTACTCACATGGA 774
Query 781 AGGCGGAGAAACCGATGATGCAGCGAATCAGAATAATGCTCAAACTCGTACTGTGCTTCG 840
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 775 AGGCGGGGAAACTGATGATGCAGCGAATCATAATAATGCTCAAACTCGTACTCTGCTTCG 834
Query 841 ACTGTGTCGTGCTTCTTCGTCATCTGAATCTCCTCTCAGAAGAGCAGCAGCCTTGTCACA 900
||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 ACTGTGTGGCGCTTCTTCATCATCTGAATCTCCTCTGAGAAGAGCAGCAGCCTTGTCACA 894
Query 901 ACACAATATGGTTCCCCATACTTCTCGATGGAGCCCGCGT-GTGGGTCCTTCTCAACCCG 959
||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||
Sbjct 895 ACACAATATGGTTCCACATACTTCTCGATGGAGCCCGC-TCGTTGGTCCTTCTCAACCCG 953
Query 960 GTCCTGCAGTCACTGTCTCTGCATCTGGAACAAACTACATTGCTTCATCTCCTTCACCAG 1019
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 954 GTCCTGCAGTCACTGTTTCTGCGTCTGGAACAAACTACATTGCTTCATCTCCTTCACCAG 1013
Query 1020 CTGGTTCTGGTGGCACTTCTGTTTTCAGAGAATCACGTCTTCAGAGTCCGTGGAATTAGC 1079
| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1014 CGGGTTTTGGTGGCACTTCTGTTTTCAGAGAATCACGGCTTCAGAGTCCATGGAATTAGC 1073
Query 1080 CAGCTTCTCCTCTATCTTTTTGTTTTTCGTAGCTGTAACGTGTTCATATC-ATTGATGTA 1138
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 CAGCTTCTCCTATATCTTTTTGTTTTTCGTAGCTGTAACGTGTTCATATTGATTGATGTA 1133
Query 1139 TAAATCAGACTCATCCATATCTTATTAGTATTATTGCAAAATGCAAACCAATATAATC-A 1197
||||||||||||||||||||||||||||||||| |||||||||||||| || | || |
Sbjct 1134 TAAATCAGACTCATCCATATCTTATTAGTATTACTGCAAAATGCAAAC---TA-A-TCCA 1188
Query 1198 TTTGTTCtttttttCTCAAAGGGGTCATATCTACATTGATT---ATTGACTGAATCAGTT 1254
||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1189 TTTCTTCTTATTTTCTCAAAGGT-TCATATCTACATTGATTGTTATTGACTGAATCAGCT 1247
Query 1255 GA 1256
||
Sbjct 1248 GA 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61746670350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5