BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485150
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47860.1 | Symbols: CHL | chloroplastic lipocalin | chr3:176... 1574 0.0
> AT3G47860.1 | Symbols: CHL | chloroplastic lipocalin | chr3:17656670-17658316
REVERSE LENGTH=1217
Length=1217
Score = 1574 bits (852), Expect = 0.0
Identities = 1104/1217 (91%), Gaps = 52/1217 (4%)
Strand=Plus/Plus
Query 1 ATAAAAGTCTGTGGCGACC--AA-AA--GA-AGCG-AAGAGAGAGA-ATG--A-TATT-A 48
||||||||||||||||||| || || || || | |||||||||| ||| | |||| |
Sbjct 1 ATAAAAGTCTGTGGCGACCAAAAGAAGTGAGAGAGAAAGAGAGAGATATGATATTATTAA 60
Query 49 --ACTAGTATAAGCCTCTCAACACCAGTTTCTTCTCAAAGGTTCTCTCCACCTCCTGCCA 106
| ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 61 GTAGTAGTATAAGCCTCTCAAGACCAGTTTCTTCTCAAAGCTTCTCTCCACCTGCTGCCA 120
Query 107 CTACAACGAGGAGATCTCATTTCTCTGT--CA--C-A--G-T-CTGTTCTTCCAGAGGGT 157
|| |||| ||||||||||||| |||||| || | | | | ||||||||||||| |||
Sbjct 121 CTTCAACAAGGAGATCTCATTCCTCTGTCACAGTCAAGTGCTGCTGTTCTTCCAGAAGGT 180
Query 158 TGTTGAAGAATGCTGAGTTAAAATGTTTCTTGGAGAAGCCAATTGGAAA-CCTGTCTTTG 216
||||||||||| ||||||||||||||| ||||||||| | || |||| || | |||||
Sbjct 181 TGTTGAAGAATCCTGAGTTAAAATGTTCCTTGGAGAA-TCTCTTTGAAATCCAGGCTTTG 239
Query 217 AGAAAGCATCTTGTTTCAGGGTTGGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGT 276
|| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGAAGTGTTTTGTTTCAGGGTTTGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGT 299
Query 277 ATTGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCT--T-CT 333
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 300 ATAGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCTGCTGCT 359
Query 334 GTGGAAG-AAACAAAGCTGACTCTTCCACTTGACAATGCATCTGATGGTGACTCGGAAGC 392
|||| || |||| ||||||| | | ||| | |||||||||||||||||||| |
Sbjct 360 GTGGGAGAAAAC-AAGCTGA--C-T---CTT--C----CATCTGATGGTGACTCGGAATC 406
Query 393 gatgatgatgatgatgatgaGAGGCATGACTACTAAGAACTTTGACCCAGTTAGGTACTC 452
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 407 AATGATGATGATGATGATGAGAGGCATGACTGCTAAGAACTTTGACCCTGTTAGGTACTC 466
Query 453 TGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCGGGTCAAGGCCAAGAAGA 512
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 TGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCAGGTCAAGGCCAAGAAGA 526
Query 513 CTGTCATTGTACCCAGGGGGTATACTCGTTTGATATGAAGGAATCCGCCATTCGAGTAGA 572
||||||||| || ||||| |||||| ||||||||||||||||||| |||||| |||||||
Sbjct 527 CTGTCATTGCACTCAGGGAGTATACACGTTTGATATGAAGGAATCAGCCATTAGAGTAGA 586
Query 573 TACATTTTGTGTTCACGGCAGTCCTGATGGATATATAACAGGAATCAGAGGAAAAGTCCA 632
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 587 TACATTTTGTGTTCATGGCAGCCCTGATGGATATATAACAGGAATCAGAGGGAAAGTTCA 646
Query 633 ATGCGTTGGAGCGGAAGATCTGGAGAAAAGCGAGACTGACTTAGAAAAGCGAGAGATGAT 692
|||||| ||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 647 ATGCGTGGGAGCGGAAGACCTCGAGAAAAGCGAGACTGACTTAGAAAAGCAAGAGATGAT 706
Query 693 TAAAGAGAAGTGTTTCCTACGATTTCCCACAATTCCTTTTATTCCCAAGTTGCCTTATGA 752
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 707 TAAAGAGAAGTGTTTCCTACGATTTCCCACCATTCCTTTTATCCCCAAGTTGCCTTATGA 766
Query 753 TGTCATAGCCACTGACTACGACAACTACGCTCTTGTTTCTGGAGCCAAAGACAAGGGCTT 812
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 767 TGTCATAGCCACAGACTACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTT 826
Query 813 TGTTCAGGTATACTCAAGGACACCTAACCCAGGACCTGAGTTCATCGCCAAGTACAAGAA 872
||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 827 TGTTCAGGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAGAA 886
Query 873 CTACTTGGCACAATTTGGCTATGACCCGGATAAAATAAAGGATACACCACAGGACTGCGA 932
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 887 CTACTTGGCACAATTTGGCTATGACCCGGAAAAAATAAAGGATACACCACAGGACTGTGA 946
Query 933 AGTGATGTCTGATGGTGAGCTAGCTGCCATGATGTCCATGCCAGGTATGGAGCAAACACT 992
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 947 AGTGA---CTGATGCTGAGCTAGCAGCCATGATGTCCATGCCAGGTATGGAGCAAACACT 1003
Query 993 GACAAACCAGTTTCCAGATCTTGGATTAAGAAAGTCGGTCCAGTTTGATCCCTTCACAAG 1052
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1004 GACCAACCAGTTTCCAGATCTTGGATTAAGAAAGTCAGTCCAGTTTGATCCCTTCACAAG 1063
Query 1053 TGTGTTTGAAACCTTGAAGAAACTTGTCCCGCTCTATTTCAAGTAGAGCA-GCTTCTTTT 1111
||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1064 TGTGTTTGAAACCTTGAAGAAACTTGTACCGCTCTATTTCAAATAGAGCAAGCTTCTTT- 1122
Query 1112 GCTCAAATTCTTATGTAGATGATATAATCACTGTCCTTATATACAT--CTTCCAGAATCA 1169
||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1123 GCTCAAATTCTTATGTAGAC--TATAATCACTGTCCATATATACATATCTTCCAGAATCA 1180
Query 1170 AA-CACTCTTCTGATCA 1185
|| ||||||||||||||
Sbjct 1181 AAACACTCTTCTGATCA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5