BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485156
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47930.1 | Symbols: ATGLDH, GLDH | L-galactono-1,4-lactone d... 3061 0.0
> AT3G47930.1 | Symbols: ATGLDH, GLDH | L-galactono-1,4-lactone
dehydrogenase | chr3:17684444-17687620 FORWARD LENGTH=2083
Length=2083
Score = 3061 bits (1657), Expect = 0.0
Identities = 1833/1919 (96%), Gaps = 7/1919 (0%)
Strand=Plus/Plus
Query 1 AGAACATTTCGCTCAGGTTCAGATCGCCTGAAGTAAAAC-aaaaaaaTGCTCCGGTCACT 59
|||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 11 AGAACATTTCCCTCAGGTTCAGATCGCCTGAAGTTAAACAAAAAAAATGCTCCGGTCACT 70
Query 60 TCTTCTCCGCCGCTCCGTCGGCCATTCTCTGGGAACCCTATCTCCGTCTTCATCCACCAT 119
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 71 TCTTCTCCGACGCTCCGTCGGCCATTCTCTCGGAACCCTATCTCCGTCTTCATCCACCAT 130
Query 120 CCGGT-CTCCATTTTCGCCTCCCCGTACTCTCTGCACCGCCGGTCAAACATTGACTCCAC 178
||| | || |||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 131 CCGTTCCT-CATTTTCGCCTCATCGTACTCTCTGCACCACCGGTCAAACATTGACACCAC 189
Query 179 CACCGCCGCCACCGCCACGTCCTCCACCTCCGATTCCGTCCACCGCCTCAGAAGC-CGAA 237
|||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||
Sbjct 190 CACCGCCGCCACCGCCACGTCCTCCACCTCCGCCTCCGGCCACCGCCTCAGAAGCTC-AA 248
Query 238 TTCCGTAAATACGCCGGATACGCAGCACTCGCTGTCTTCTCTGGAGTCGCTACCTATTTC 297
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 249 TTCCGTAAATACGCCGGATACGCAGCACTCGCTATCTTCTCTGGAGTTGCTACCTATTTC 308
Query 298 TCATTTCCATTCCCTGAAAATGCTAAGCACAAGAAGGCTCAAATCTTCCGTTACGCTCCG 357
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 309 TCATTTCCATTCCCTGAGAATGCTAAACACAAGAAGGCTCAAATCTTCCGTTACGCTCCT 368
Query 358 TTGCCTGAAGATCTTCACACTGTCTCTAATTGGAGTGGTACGCATGAGGTACAGACGAGG 417
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 369 TTACCTGAAGATCTTCACACTGTCTCTAATTGGAGTGGTACTCATGAGGTACAGACTAGG 428
Query 418 AACTTTAATCAACCGGAGAATCTAGCTGACCTCGAAGCTCTCGTTAAGGAATCTCATGAG 477
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 429 AACTTTAATCAACCGGAGAATCTTGCTGATCTCGAAGCTCTTGTTAAGGAATCTCATGAG 488
Query 478 AAGAAGTTAAGGATCCGACCCGTTGGATCGGGTCTGTCCCCCAATGGGATTGGTTTGTCT 537
|||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||
Sbjct 489 AAGAAGTTAAGGATTCGTCCCGTTGGATCGGGTCTCTCGCCTAATGGGATTGGTTTGTCT 548
Query 538 CGCTCCGGGATGGTGAATCTAGCGCTCATGGATAAAGTTCTAGAGGTGGATAAAGAGAAG 597
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 549 CGCTCTGGGATGGTGAATCTGGCGCTTATGGATAAAGTTCTAGAGGTGGATAAAGAGAAG 608
Query 598 AAGAGAGTTACGGTGCAGGCTGGGATTAGGGTCCAGCAATTGGTTGACGCCATTAAAGAC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAGAGAGTTACGGTGCAGGCTGGGATTAGGGTCCAGCAATTGGTTGACGCCATTAAAGAC 668
Query 658 TATGGTCTGACTCTTCAGAACTTTGCCTCCATTAGAGAGCAGCAAATTGGTGGTATTATT 717
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 669 TATGGTCTTACTCTTCAGAACTTTGCCTCCATTAGAGAGCAGCAGATTGGTGGTATTATT 728
Query 718 CAGGTTGGGGCACATGGAACAGGTGCTAGATTGCCTCCTATTGATGAGCAGGTGATCAGT 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CAGGTTGGGGCACATGGGACAGGTGCTAGATTGCCTCCTATTGATGAGCAGGTGATCAGT 788
Query 778 ATGAAGCTGGTTACTCCTGCAAAGGGAACAATTGAACTTTCAAGAGAGAAAGATCCGGAG 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATGAAGCTGGTTACTCCTGCGAAGGGAACAATTGAACTTTCAAGAGAGAAAGATCCGGAG 848
Query 838 CTCTTTCATCTAGCTCGATGTGGCCTTGGTGGACTTGGAGTTGTTGCTGAGGTCACCCTC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CTCTTTCATCTAGCTCGATGTGGCCTTGGTGGACTTGGAGTTGTTGCTGAGGTCACCCTC 908
Query 898 CAATGTGTGGAAAGACATGAACTTGTGGAGCACACATACGTTTCAAACTTGCTAGAAATC 957
||||| || | |||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 909 CAATGCGTTGCAAGACATGAACTTGTGGAACACACATACGTCTCAAACTTGCAAGAAATC 968
Query 958 AAGAAAAATCACAAAAAATTGCTCTCTGCAAACAAGCATGTTAAGTACCTATATATTCCT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AAGAAAAATCACAAAAAATTGCTCTCTGCAAACAAGCATGTTAAGTACCTATATATTCCT 1028
Query 1018 TATACCGACACAGTCGTGGTTGTAACATGCAACCCTGTATCAAAATGGAGTGGGCCACCT 1077
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1029 TATACCGACACAGTCGTGGTTGTAACATGCAATCCTGTATCAAAATGGAGTGGGCCACCT 1088
Query 1078 AAGGACAAACCAAAGTACACTACAGAGGAGGCTGTACAGCATGTCCGTGATCTCTATAGA 1137
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1089 AAGGACAAACCAAAGTACACTACAGATGAGGCTGTACAGCATGTCCGTGATCTCTACAGA 1148
Query 1138 GAGAGCATTGTGAAGTATAGGGTCCAGGACTCTGGTAAGAAGTCTCCTGACAGCAATGAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1149 GAGAGCATTGTGAAGTATAGGGTCCAGGACTCTGGTAAGAAGTCTCCTGACAGCAGTGAG 1208
Query 1198 CCAGATATAAAGGAGCTTTCGTTTACAGAGTTGAGAGATAAGCTACTTGCCCTCGATCCT 1257
||||| ||| |||||||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct 1209 CCAGACATACAGGAGCTTTCATTTACAGAGTTGAGAGACAAACTACTTGCCCTTGATCCT 1268
Query 1258 CTCAATGACGTTCATGTTGCAAAAGTAAATCAGGCTGAGGCGGAGTTTTGGAAAAAATCA 1317
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1269 CTCAATGACGTTCACGTTGCAAAAGTAAATCAAGCTGAGGCAGAGTTTTGGAAAAAATCA 1328
Query 1318 GAAGGATATAGAGTAGGGTGGAGTGATGAAATTCTGGGCTTTGACTGTGGTGGTCAACAG 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1329 GAAGGATATAGAGTAGGGTGGAGTGATGAAATTCTGGGCTTTGACTGTGGTGGTCAGCAG 1388
Query 1378 TGGGTATCAGAATCTTGTTTTCCTGCTGGAACGCTTGCCAACCCTAGCATGAAAGACCTT 1437
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1389 TGGGTGTCAGAATCTTGTTTTCCTGCTGGAACCCTCGCCAACCCTAGCATGAAAGACCTT 1448
Query 1438 GAATACATAGAAGAGCTGAAAAAACTAATAGAAAAGGAAGCAATACCAGCACCAT-CTCC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1449 GAATACATAGAAGAGCTGAAAAAACTAATAGAAAAGGAAGCAATACCAGCACC-TGCTCC 1507
Query 1497 TATAGAGCAGCGATGGACGGCTCGAAGTAAGAGCCCCATTAGTCCTGCATTCAGCACTGC 1556
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1508 AATAGAGCAGCGATGGACAGCTCGAAGTAAGAGCCCCATTAGTCCTGCATTCAGCACTTC 1567
Query 1557 AGAGGATGACATTTTTTCATGGGTTGGTATAATCATGTACCTCCCGACAGCAGACCCTCG 1616
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 AGAGGATGATATTTTCTCATGGGTTGGTATAATCATGTACCTCCCGACAGCAGACCCTCG 1627
Query 1617 CCAGAGGAAGGACATCACAGATGAATTTTTCCACTATAGACATTTGACACAGAAGCAATT 1676
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1628 CCAGAGAAAGGACATCACAGATGAATTTTTCCACTATAGACATTTGACACAGAAACAATT 1687
Query 1677 ATGGGATCAATATTCTGCGTATGAACATTGGGCTAAAATTGAGATACCAAAAGATAAAGA 1736
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1688 GTGGGATCAATTTTCTGCGTATGAACATTGGGCTAAAATTGAGATACCAAAAGACAAAGA 1747
Query 1737 GGAACTTGAAGCCTTACAAGCAAGAATCAGAAAACGTTTCCCAGTGGATAAATACAACAA 1796
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 1748 AGAACTTGAAGCCTTACAGGCAAGAATAAGAAAACGTTTCCCAGTGGATGCATACAACAA 1807
Query 1797 AGCACGCAGGGAGCTGGACCCAAATAGAATCCTCTCCAACAACATGGTAGAAAAGCTCTT 1856
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1808 AGCACGTAGGGAGCTGGACCCAAATAGAATCCTCTCCAACAACATGGTGGAAAAGCTCTT 1867
Query 1857 CCCAGTCTCCACCACTGCTTAAAACATTTTCACCAATAGATTATTTCCTCTTGTTGGGA 1915
|||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||
Sbjct 1868 CCCAGTCTCCACCACTGCTTAAAACATTTTCATCAATAGGTTTTTTCCTCTTTTTGGGA 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96083843130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5