BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485157 Length=1475 Score E Sequences producing significant alignments: (Bits) Value AT3G47940.1 | Symbols: | DNAJ heat shock family protein | chr3... 2139 0.0 > AT3G47940.1 | Symbols: | DNAJ heat shock family protein | chr3:17687956-17689549 REVERSE LENGTH=1476 Length=1476 Score = 2139 bits (1158), Expect = 0.0 Identities = 1379/1484 (93%), Gaps = 22/1484 (1%) Strand=Plus/Plus Query 1 CGGTGGAAAGATCCTTCCCTCTTTCCCTAGTCT-CCACGCATCTGTTTCGCATTTTCCCC 59 ||||||||| | ||||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct 3 CGGTGGAAACAGCCTTCCCTC-TTCCCTAGTCTCCCACGCTTCTGTTTCGCATTTTCCCC 61 Query 60 CTTTTTCTCCGGCGACGGCCAATCATCGTCAACCGCCGGCAAAAACCTCAGATTCGTGAA 119 | ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 62 CATTTTCTCCGGCGACGGCCAATCATCATCAACCGCCGGCGAAAACCTCAGATTCGTGAA 121 Query 120 GCTGATTCATTCATTGTGTGATTAAGATGGGTGTAGATTACTACAATATACTCAAGGTAA 179 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 122 TCTGATTCATTCATTCCGTGATTAAGATGGGTGTAGATTACTACAATATACTAAAGGTGA 181 Query 180 ACCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGC 239 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 ATCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGC 241 Query 240 ATCCCGATAAGAACCCATCGACGCGTCGAGACGAAGCAGAAGCCAAATTCAAACGGATCT 299 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 242 ATCCCGATAAGAATCCATCGACGCGTCGAGACGAAGCTGAAGCCAAATTCAAACGGATCT 301 Query 300 CCGAAGCTTACGACGTTCTTTCCGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCG 359 ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 302 CCGAAGCTTACGATGTTCTCTCTGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCG 361 Query 360 AGGAAGGTCTCAAGTCTGGCAAAATCCCTAAttcttcttcttcatcggaggcttcttctt 419 |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 362 AGGAAGGTCTTAAATCTGGCAAAATCCCTAA---TTCTTCTTCATCGGAGGCTTCTTCTT 418 Query 420 catcttcttcttcttcCTCGAGATATTCGCATTTTCATCAGCATAGGCCGCAGCATCCGC 479 | ||||||||||| |||||||||||| | || ||||||||||| |||||||||||||||| Sbjct 419 CTTCTTCTTCTTCCTCCTCGAGATATCCTCACTTTCATCAGCACAGGCCGCAGCATCCGC 478 Query 480 CTAATGCGGCGTCGTTTCGTTTTAACCCTAGAGATGCGGAGGATATCTATGCTGAGTTCT 539 |||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 479 CTAACGCTTCGTCGTTTCGTTTTAACCCTAGAGACGCGGAGGACATCTATGCTGAGTTCT 538 Query 540 TTGGATCTGAAAGTGGAGGAGGAAGC---AATGGTGGTGGGAGAGGAAACAGAACGTATA 596 |||||||||||| ||| ||||||||| |||| ||||||||||||||||||| ||| || Sbjct 539 TTGGATCTGAAAATGGTGGAGGAAGCAATAATGCTGGTGGGAGAGGAAACAGAGCGTTTA 598 Query 597 GGAATGGTCATTCCAACACCGGTGGTGCTAATGGTTATAGCGGTGAGATGAGGAAAGTTC 656 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 599 GGAATGGTCATTTCAACACCGGTGGTGCCAATGGTTATAGCGGTGAGATGAGGAAAGTTC 658 Query 657 CAGCTGTGGAGAATCCATTGCATGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGA 716 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 659 CAGCTATGGAGAATCCATTGCCTGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGA 718 Query 717 AGATGCGGTTAACTAGAAATGTATATGATGCTTCTGGGAGGATGATGGTAGAGGAGGAGA 776 |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||||| Sbjct 719 AGATGCGGATAACTAGAAATGTCTATGATGCTTCTGGGAGAATGATGGTAGAGGCGGAGA 778 Query 777 TATTGCCTATAGATATAAAACCTGGTTGGAAGAAAGGTACGAAGCTGACATTCCCTAAGA 836 ||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 779 TATTGCCTATAGAAATAAAACCTGGTTGGAAGAAAGGAACAAAGCTGACATTTCCTAAGA 838 Query 837 AAGGCAATGAAGAACCTGGAATCATACCGGCGGATATTATTTTCGTGGTTGAAGAGAAGC 896 ||||||||||||| |||||||||||||| || |||||| | ||||||||||||||||||| Sbjct 839 AAGGCAATGAAGAGCCTGGAATCATACCAGCAGATATTGTATTCGTGGTTGAAGAGAAGC 898 Query 897 CACATCCTGTTTACAAGAGAGATGGAAACGACCTTTTGGTTAATCAAGAGATAACTCTAC 956 ||||||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||| Sbjct 899 CACATCCTGTTTACAAGAGAGATGGGAACGATCTTTTGGTCAGTCAGGAGATAACTCTAC 958 Query 957 TTGAAGCCTTAACTGGTAAGATC-GTTAACCTGATCACGCTTGATGGAAGGACTCTCATG 1015 ||||||| ||||||||||||| | || || |||||||||||||||||||||||||||||| Sbjct 959 TTGAAGCTTTAACTGGTAAGA-CTGTCAATCTGATCACGCTTGATGGAAGGACTCTCATG 1017 Query 1016 ATCCCACTAACCGAGATTATTAAACCCGATCATGAGATTGTTGTTCCAAACGAAGGAATG 1075 |||||| | || ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1018 ATCCCATTGACGGAGATCATTAAACCTGATCATGAGATTGTTGTTCCAAACGAAGGAATG 1077 Query 1076 CCAATTTCTAAAGAACCCGGTAAAAAA-GGCAACCTGAAATTGAAGCTTAGTGTGAAATA 1134 || || ||||||||||| || |||||| || ||| ||||| ||||||||||||||||||| Sbjct 1078 CCTATCTCTAAAGAACCTGG-AAAAAAGGGTAACTTGAAACTGAAGCTTAGTGTGAAATA 1136 Query 1135 CCCGTCGAGGCTCACATCGGAACAGAAATCCGAGCTAAAGAGAGTTCTTGGTGGGGTATC 1194 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || Sbjct 1137 CCCGTCGAGGCTCACATCGGATCAGAAATTCGAGCTAAAGAGAGTTCTTGGTGGGGTCTC 1196 Query 1195 ATGAAGAACTCAATGATGAATGTAGATAGCAAAGGTAGAGGAGATGATAGATTGTGAATG 1254 |||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1197 ATGAGGAAGTCATTGATGAATGTAGATAGCAAAAGTAGAGGAGATGATAGATTGTGAATG 1256 Query 1255 GTAGGAGGGATTCTTCTAAGGAGGCTTGGATTTGAGAGCCGAAGAACAAACACAAGCTTT 1314 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1257 GTAGGAGGGATTCTTCTAAGGAGGCTTGGATTTGAGAGCCGAAGAACCAACACAAGCTTT 1316 Query 1315 GCTTCTGTCTTTTTACTTCTCTTGTTTGAAATTAGAC-TTTTTCCCCTTTGTTTAATTAT 1373 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1317 GCTTCTGTCTTTTTACTTCTCTTGTTTGAAATTAGACCTTTTTCCCCTTTGTTTAATTAT 1376 Query 1374 TTCATTGATTTGATTTGATTTCGTTGCCTTCTAATGTTTATACAGTGT--ACTCCATGAA 1431 ||||||||||||||||||||||| |||||||||||||||| | ||||| |||||| | Sbjct 1377 TTCATTGATTTGATTTGATTTCGCTGCCTTCTAATGTTTAGAGAGTGTGTACTCCA--A- 1433 Query 1432 TTAAGGTATGCTTTGTTACCTATTTATCTTCTTTGATAAAAATT 1475 |||||||||||||||||||||||||| ||||||||||||| Sbjct 1434 ----GGTATGCTTTGTTACCTATTTATCTTATTTGATAAAAATT 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72740589705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5