BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485157
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47940.1 | Symbols: | DNAJ heat shock family protein | chr3... 2139 0.0
> AT3G47940.1 | Symbols: | DNAJ heat shock family protein | chr3:17687956-17689549
REVERSE LENGTH=1476
Length=1476
Score = 2139 bits (1158), Expect = 0.0
Identities = 1379/1484 (93%), Gaps = 22/1484 (1%)
Strand=Plus/Plus
Query 1 CGGTGGAAAGATCCTTCCCTCTTTCCCTAGTCT-CCACGCATCTGTTTCGCATTTTCCCC 59
||||||||| | ||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 3 CGGTGGAAACAGCCTTCCCTC-TTCCCTAGTCTCCCACGCTTCTGTTTCGCATTTTCCCC 61
Query 60 CTTTTTCTCCGGCGACGGCCAATCATCGTCAACCGCCGGCAAAAACCTCAGATTCGTGAA 119
| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 62 CATTTTCTCCGGCGACGGCCAATCATCATCAACCGCCGGCGAAAACCTCAGATTCGTGAA 121
Query 120 GCTGATTCATTCATTGTGTGATTAAGATGGGTGTAGATTACTACAATATACTCAAGGTAA 179
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 122 TCTGATTCATTCATTCCGTGATTAAGATGGGTGTAGATTACTACAATATACTAAAGGTGA 181
Query 180 ACCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGC 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATCACAACGCGACGGAGGATGATCTCAAGAAAGCTTACAAGCGTCTCGCCATGATTTGGC 241
Query 240 ATCCCGATAAGAACCCATCGACGCGTCGAGACGAAGCAGAAGCCAAATTCAAACGGATCT 299
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 ATCCCGATAAGAATCCATCGACGCGTCGAGACGAAGCTGAAGCCAAATTCAAACGGATCT 301
Query 300 CCGAAGCTTACGACGTTCTTTCCGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCG 359
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 302 CCGAAGCTTACGATGTTCTCTCTGATCCTCAGAAACGTCAGATCTACGATCTTTACGGCG 361
Query 360 AGGAAGGTCTCAAGTCTGGCAAAATCCCTAAttcttcttcttcatcggaggcttcttctt 419
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 AGGAAGGTCTTAAATCTGGCAAAATCCCTAA---TTCTTCTTCATCGGAGGCTTCTTCTT 418
Query 420 catcttcttcttcttcCTCGAGATATTCGCATTTTCATCAGCATAGGCCGCAGCATCCGC 479
| ||||||||||| |||||||||||| | || ||||||||||| ||||||||||||||||
Sbjct 419 CTTCTTCTTCTTCCTCCTCGAGATATCCTCACTTTCATCAGCACAGGCCGCAGCATCCGC 478
Query 480 CTAATGCGGCGTCGTTTCGTTTTAACCCTAGAGATGCGGAGGATATCTATGCTGAGTTCT 539
|||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 479 CTAACGCTTCGTCGTTTCGTTTTAACCCTAGAGACGCGGAGGACATCTATGCTGAGTTCT 538
Query 540 TTGGATCTGAAAGTGGAGGAGGAAGC---AATGGTGGTGGGAGAGGAAACAGAACGTATA 596
|||||||||||| ||| ||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 539 TTGGATCTGAAAATGGTGGAGGAAGCAATAATGCTGGTGGGAGAGGAAACAGAGCGTTTA 598
Query 597 GGAATGGTCATTCCAACACCGGTGGTGCTAATGGTTATAGCGGTGAGATGAGGAAAGTTC 656
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 GGAATGGTCATTTCAACACCGGTGGTGCCAATGGTTATAGCGGTGAGATGAGGAAAGTTC 658
Query 657 CAGCTGTGGAGAATCCATTGCATGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGA 716
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGCTATGGAGAATCCATTGCCTGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGA 718
Query 717 AGATGCGGTTAACTAGAAATGTATATGATGCTTCTGGGAGGATGATGGTAGAGGAGGAGA 776
|||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 719 AGATGCGGATAACTAGAAATGTCTATGATGCTTCTGGGAGAATGATGGTAGAGGCGGAGA 778
Query 777 TATTGCCTATAGATATAAAACCTGGTTGGAAGAAAGGTACGAAGCTGACATTCCCTAAGA 836
||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 779 TATTGCCTATAGAAATAAAACCTGGTTGGAAGAAAGGAACAAAGCTGACATTTCCTAAGA 838
Query 837 AAGGCAATGAAGAACCTGGAATCATACCGGCGGATATTATTTTCGTGGTTGAAGAGAAGC 896
||||||||||||| |||||||||||||| || |||||| | |||||||||||||||||||
Sbjct 839 AAGGCAATGAAGAGCCTGGAATCATACCAGCAGATATTGTATTCGTGGTTGAAGAGAAGC 898
Query 897 CACATCCTGTTTACAAGAGAGATGGAAACGACCTTTTGGTTAATCAAGAGATAACTCTAC 956
||||||||||||||||||||||||| ||||| |||||||| | ||| |||||||||||||
Sbjct 899 CACATCCTGTTTACAAGAGAGATGGGAACGATCTTTTGGTCAGTCAGGAGATAACTCTAC 958
Query 957 TTGAAGCCTTAACTGGTAAGATC-GTTAACCTGATCACGCTTGATGGAAGGACTCTCATG 1015
||||||| ||||||||||||| | || || ||||||||||||||||||||||||||||||
Sbjct 959 TTGAAGCTTTAACTGGTAAGA-CTGTCAATCTGATCACGCTTGATGGAAGGACTCTCATG 1017
Query 1016 ATCCCACTAACCGAGATTATTAAACCCGATCATGAGATTGTTGTTCCAAACGAAGGAATG 1075
|||||| | || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 ATCCCATTGACGGAGATCATTAAACCTGATCATGAGATTGTTGTTCCAAACGAAGGAATG 1077
Query 1076 CCAATTTCTAAAGAACCCGGTAAAAAA-GGCAACCTGAAATTGAAGCTTAGTGTGAAATA 1134
|| || ||||||||||| || |||||| || ||| ||||| |||||||||||||||||||
Sbjct 1078 CCTATCTCTAAAGAACCTGG-AAAAAAGGGTAACTTGAAACTGAAGCTTAGTGTGAAATA 1136
Query 1135 CCCGTCGAGGCTCACATCGGAACAGAAATCCGAGCTAAAGAGAGTTCTTGGTGGGGTATC 1194
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct 1137 CCCGTCGAGGCTCACATCGGATCAGAAATTCGAGCTAAAGAGAGTTCTTGGTGGGGTCTC 1196
Query 1195 ATGAAGAACTCAATGATGAATGTAGATAGCAAAGGTAGAGGAGATGATAGATTGTGAATG 1254
|||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 ATGAGGAAGTCATTGATGAATGTAGATAGCAAAAGTAGAGGAGATGATAGATTGTGAATG 1256
Query 1255 GTAGGAGGGATTCTTCTAAGGAGGCTTGGATTTGAGAGCCGAAGAACAAACACAAGCTTT 1314
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 GTAGGAGGGATTCTTCTAAGGAGGCTTGGATTTGAGAGCCGAAGAACCAACACAAGCTTT 1316
Query 1315 GCTTCTGTCTTTTTACTTCTCTTGTTTGAAATTAGAC-TTTTTCCCCTTTGTTTAATTAT 1373
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1317 GCTTCTGTCTTTTTACTTCTCTTGTTTGAAATTAGACCTTTTTCCCCTTTGTTTAATTAT 1376
Query 1374 TTCATTGATTTGATTTGATTTCGTTGCCTTCTAATGTTTATACAGTGT--ACTCCATGAA 1431
||||||||||||||||||||||| |||||||||||||||| | ||||| |||||| |
Sbjct 1377 TTCATTGATTTGATTTGATTTCGCTGCCTTCTAATGTTTAGAGAGTGTGTACTCCA--A- 1433
Query 1432 TTAAGGTATGCTTTGTTACCTATTTATCTTCTTTGATAAAAATT 1475
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1434 ----GGTATGCTTTGTTACCTATTTATCTTATTTGATAAAAATT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5