BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485159
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47980.1 | Symbols: | Integral membrane HPP family protein ... 1541 0.0
> AT3G47980.1 | Symbols: | Integral membrane HPP family protein
| chr3:17710374-17712866 FORWARD LENGTH=1097
Length=1097
Score = 1541 bits (834), Expect = 0.0
Identities = 965/1027 (94%), Gaps = 13/1027 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTGTCATCCCCAATTAGAAAAGAAAAGAAGGGAACATATTTTTGATATTCTTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 9 TCTCTCTCTGTCATCCCTAATTAGAAAAGAAAAGAAGGGAACATATTTTTG--AGTCTTT 66
Query 61 GTTGAGATATTTACATCAAAAC-C-CTCCCAACAACCATGGCTTCGCTTCCGGTGAAGCC 118
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 67 GTTGAGATATTTACATCAAAACACTCTCTCAACAACCATGGCTTCGCTTCCGGTGAAGCC 126
Query 119 TCTACCTTCCGGCCACTTACAGCTTCATCGCCGGAATCTTATTATTCCGTCTTCAATGGG 178
|||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 127 TCTACCTTCCGGCCACTTACAGCTTCATAGCCGGAATCTTATTATTCCGCCATCAATGGT 186
Query 179 AACCGTTGGTTTCAAAAGGCATAATTTCTTAGGAGTCTCTTCTTATGATTTATGTATTGA 238
|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 187 AACCGTTGGTTTCAAAAGGCATCACTTCTTAGGAGTCTCTTCTTATGGTTTATGTATTGA 246
Query 239 TGAATCTGTGAGGCATATGAGAAGCCTTAGGTCGTCAAGCAATCGTTGGCCAGTAAGCAA 298
||||||||| ||||||||||||||||| |||||||| ||||||||| ||| |||||| ||
Sbjct 247 TGAATCTGTAAGGCATATGAGAAGCCTAAGGTCGTCGAGCAATCGTCGGCGAGTAAGTAA 306
Query 299 AAGCGCCGGCGTGTCTATGCCGGTGGCTTCCTCTGATGATTTTCCGGCGGTTTCTTGGGA 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 307 AAGCGCCGGCGTGTCTATGCCGGTGGCTTCCTCTGATGATTTTCCAGCGGTTTCTTGGGA 366
Query 359 AACTTGGAAGCCCGAAAAGACCACGGTGGCTCCGTCGCTGAGTGACGTCATCTGGCCTGC 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GTCTTGGAAGCCGGAAAAGACCACGGTGGCTCCGTCGCTGAGTGACGTCATCTGGCCTGC 426
Query 419 AGCAGGAGCCTTTGCGGCGATGGCGATACTGGGAAGAATAGATCAAATGCTAAACCCTAG 478
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 427 AGCAGGAGCCTTTGCGGCGATGGCGATAATGGGAAGAATAGATCAAATGCTAAACCCTAA 486
Query 479 AGGGATCTCAATGTCGGTTGCACCACTTGGTGCCGTCTCTGCCATTCTCTTCATCACTCC 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 487 AGGGATCTCAATGTCGGTTGCACCACTTGGTGCTGTCTCTGCCATTCTCTTCACCACTCC 546
Query 539 TTCTTCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGGCTGTGCAGCCAT 598
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 547 TTCTGCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGGTTGTGCAGCCAT 606
Query 599 TGGAGTGTTGGCATTCTCAGTCTTTGGGCCAGGCTGGCTTGCCCGCAGTACGGCTCTCGC 658
|||||||||||| ||||| | |||||||||| ||||||| ||||||||||| ||||||||
Sbjct 607 TGGAGTGTTGGCGTTCTCCGCCTTTGGGCCAAGCTGGCTAGCCCGCAGTACCGCTCTCGC 666
Query 659 CGCTTCCATCGCCTTCATGGTCATCACTCGTGCCAACCATCCGCCTGCGGCGAGTTTACC 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CGCTTCCATCGCGTTCATGGTCATCACTCGTGCCAACCATCCGCCTGCGGCGAGTTTACC 726
Query 719 ACTACTGTTCATAGACGGGGCAAAGTTGCATAAACTGAACTTTTGGTACGCATTATTCCC 778
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACTACTGTTTATAGACGGAGCAAAGTTGCATAAACTGAACTTTTGGTACGCATTATTCCC 786
Query 779 CGGTGCAGCCGCTTGTATCCTTCTCTGCTTCCTCCAAGAGATCGTGTGTTACTTGAAGGA 838
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 787 CGGTGCAGCCGCTTGTATCCTTCTCTGCTTCCTCCAAGCGATCGTGGGTTACTTGAAGGA 846
Query 839 AAACTTCAAATTTTGACGAATGGAAAAGAGAATAAGAGATACGTGTTTATATAAATGTAT 898
|||||| ||||||||||||||| |||| || | |||||| |||||||| ||||||
Sbjct 847 AAACTTAAAATTTTGACGAATG-AAAA-AG-----G-GATACGCGTTTATATTTATGTAT 898
Query 899 ACAAAACACATATTGGGTGGAGGAGATTATGTGAAGATTTTTGATTCATGTTTAGACGTT 958
|||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 899 ACAAAACATATATTGG-TGGAGGAGATTCTGTGAAGATTTTTTATTCATGTTTAGACGTT 957
Query 959 TACTTTAGATGGTCGACGTATTTCGCACGTAGCCGtatataaatgaatatatatacaaat 1018
|||| ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 958 TACTGTAGTTGGTCGACGTTTTTCGTACGTACCCGTATATAAATGAATATATATACAAAT 1017
Query 1019 atatatT 1025
|||||||
Sbjct 1018 ATATATT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5