BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485160
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47990.1 | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:177131... 2178 0.0
> AT3G47990.1 | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713144-17716308
REVERSE LENGTH=1557
Length=1557
Score = 2178 bits (1179), Expect = 0.0
Identities = 1352/1428 (95%), Gaps = 41/1428 (3%)
Strand=Plus/Plus
Query 57 AAATCCCTCCTTTTTCTCTCCTTTCTCAC-T-CA-CAATCAGCTCACGATTTCGA-TAAT 112
||||||||||||||||| | ||||||||| | || | || ||||||||||||||| | ||
Sbjct 108 AAATCCCTCCTTTTTCT-T-CTTTCTCACTTGCATC-ATTAGCTCACGATTTCGAGT-AT 163
Query 113 CGATTCAACCATTTTGAtcttcaatctttcttagggtttctcctt-cttctctctctcgg 171
||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 164 CGATTCAACCATTTTGATCTTCAATCTATCTTAGGGTTTCTCCTTAATTCT-TCTCTCGG 222
Query 172 attttagctcttctcgactattactcacctctctcATGGCGATGAGAGGTGTCGATTTCA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATTTTAGCTCTTCTCGACTATTACTCACCTCTCTCATGGCGATGAGAGGTGTCGATTTCA 282
Query 232 AGTGGTACGATGGGTTCTTCTTGTCGATGCTTGCGACTAGTGTAATCATTGTAGCTGTCA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGTGGTACGATGGGTTCTTCTTGTCGATGCTTGCGACTAGTGTAATCATTGTAGCTGTCA 342
Query 292 ACTGGAACAGATATCGAGCGTGCGAATACCCGTTGCATATATGGATTGTGGTCGATTACA 351
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 343 ACTGGAACAGATATCGAGCTTGTGAATACCCGTTGCATATATGGATTGTGGTCGATTACA 402
Query 352 CCACCGTGTTTTTATTCCGCGTCTTCATGTTTGTTGACAATGGTCTTGCTGCTGGACTTG 411
||||||| ||| | ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 403 CCACCGTCTTTATCTTCCGTGTCTTCATGTTTGTTGACAATGGTCTTGCTTCTGGACTTG 462
Query 412 GCTTGGATTTTGGAAGTCAACAGCGGAACGCCATGTTTTGTGGGAGAGTGGTTGTCCTGT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GCTTGGATTTTGGAAGTCAACAGCGGAACGCCATGTTTTGTGGGAGAGTGGTTGTCCTGT 522
Query 472 CTGTCCTATCTCTGCTGCTGTATCCTTTTCTGTGGGCTTGGACTGTAATTGGTACACAAT 531
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 523 CTGTCCTATCTCTGCTGCTGTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACACAAT 582
Query 532 GGTTTACAAGGGCGAAAACTTGTTTACCTGAAGAAGGCCAGAAATGGGGTTTTCTCATTT 591
||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 583 GGTTTACAAAGTCGAAAACTTGTTTACCTGAAGAAGGCCAGAAATGGGGCTTTCTTATTT 642
Query 592 GGTTGATGTTCAGCTACTGTGGCCTCCTCTGCATTGCTTTCATCTGTGTCGGAAAGTGGT 651
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GGTTGATGTTTAGCTACTGTGGCCTCCTCTGCATTGCTTTCATCTGTGTCGGAAAGTGGT 702
Query 652 TGACACGAAGACAGGTACACTTATTACGTGCTCAGCAGGGAATTCCGATTTCAGAGTTCG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGACACGAAGACAGGTACACTTATTACGTGCTCAGCAGGGAATTCCGATTTCAGAGTTCG 762
Query 712 GGATTTTAGTTGACATGATTAGGGTACCTGACTGGGCATTCGAAGCCGCTGGCCAAGAGA 771
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 763 GGATTTTAGTTGACATGATTAGGGTACCTGACTGGGCATTCGAAGCCGCAGGCCAAGAGA 822
Query 772 TGAGAGGCATAAGTCAAGATGCTGCTACATATCATCCTGGACTTTACTTGACTCCAGCCC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TGAGAGGCATAAGTCAAGATGCTGCTACATATCATCCTGGACTTTACTTGACTCCAGCCC 882
Query 832 AGACAGAAGCTGTCGAGGCACTCATTCAAGAACTTCCTAAGTTCAGGTTAAAAGCTGTGC 891
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGACAGAAGCTGTTGAGGCACTCATTCAAGAACTTCCTAAGTTCAGGTTAAAAGCTGTGC 942
Query 892 CAGATGACTGTGGTGAATGCTTAATCTGCTTAGAGGAGTTCCATATTGGCCATGAGGTTA 951
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 943 CAGATGACTGCGGTGAATGCTTAATCTGCTTAGAGGAGTTCCATATCGGCCATGAGGTTA 1002
Query 952 GAGGTTTACCTTGCGCCCATAATTTCCATGTGGAGTGCATAGACCAGTGGCTGCGTTTAA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GAGGTTTACCTTGCGCCCATAATTTCCATGTGGAGTGCATAGACCAGTGGCTGCGTTTAA 1062
Query 1012 ACGTGAAATGTCCCCGTTGCCGGTGCTCGGTTTTCCCAGACCTCGATCTCAGTGCATTAT 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACGTGAAATGTCCCCGTTGCCGGTGCTCGGTTTTCCCAGACCTCGATCTCAGTGCATTAT 1122
Query 1072 CCAACCTCCAGAGCTCAGGAACAGAACAACCTTCACAAGTAAACACAGAAACAACAGAAG 1131
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct 1123 CCAACCTCCAGAGCTCAGGAACCGAACAACATTCACAAGTAAACACAGAAACATCAGAAG 1182
Query 1132 CTCGGTACATAAGAAGCCAACCTCAGAGCGAGAGCTACTTCTTGAGAGTTCAATCCTTAA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CTCGGTACATAAGAAGCCAACCTCAGAGCGAGAGCTACTTCTTGAGAGTTCAATCCTTAA 1242
Query 1192 TTCACCCAGTCCACACAGACACCGCTCTGGAGACTGCAGAGAACGGTGGAGTTCCTCCTG 1251
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1243 TTCACCCAGTCCACACAGATACCGCTCTGGAGACTGCAGAGAACGGCGGGGTTCCTCCTG 1302
Query 1252 TCTTGACCGATCTATCTCCATCTCGGAGATGAGAGAAAGAAATGAGCCTATGGAAATTTT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TCTTGACCGATCTATCTCCATCTCGGAGATGAGAGAAAGAAATGAGCCTATGGAAATTTT 1362
Query 1312 -ACTCAATACTAACTCTTGGCTGATTTGCCAAC--A-T-TCTTAAAA--T-----G-T-A 1357
||||| |||||||||| | ||||||||||||| | | |||||||| | | | |
Sbjct 1363 TACTCAGTACTAACTCTCGACTGATTTGCCAACCCACTCTCTTAAAAAGTTTTCAGCTTA 1422
Query 1358 AA---T-----AA---A--T---T-GGGGTTTAAAGAACAGAAAAACCAATCCTGGGTTT 1400
|| | || | | | ||||||||||||| ||||||||||||| |||||||
Sbjct 1423 AACAGTCTTGGAATGTAAATAAATTGGGGTTTAAAGAAGAGAAAAACCAATCTTGGGTTT 1482
Query 1401 ACATTTGGTAAGAATGGAGAATTGTTGATCATGTCCAAACTCTTTAAT 1448
||||||||||||| ||||| ||| |||||||||| |||||||||||||
Sbjct 1483 ACATTTGGTAAGAGTGGAGTATTATTGATCATGTTCAAACTCTTTAAT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5