BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485163

Length=518
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   597    3e-170


> AT3G48020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; 
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr3:17724590-17725198 FORWARD LENGTH=609
Length=609

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 390/420 (93%), Gaps = 13/420 (3%)
 Strand=Plus/Plus

Query  1    GTAATGGAAGTTGGACAAGCGAATCCGCTTCTTGGTGGTGAATCGTCTTGCTGTTCCAAC  60
            ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||
Sbjct  1    GTAATGGAAGTTGGACAAGCGAATCCGCTTC-T--TGGTGAATCGTCTTGCTGTTCC-AC  56

Query  61   AGTACCGCTAAATCCTCCTGGTGGCATCGAATTCACAG---CAACCACGAGGAGTCACGG  117
               |||| |||||||||||||||||| |||||||||||   ||||||| ||||| |||||
Sbjct  57   --CACCGTTAAATCCTCCTGGTGGCAGCGAATTCACAGAAACAACCACCAGGAGCCACGG  114

Query  118  TGGTGGGTCCGAGCGTTTCTAAAGATCCGAGAATGGTCGGAGATCGTGGCTGGGCCACGG  177
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  TGGTGGGTGCGAGCGTTTCTAAAGATCCGAGAATGGTCGGAGATCGTGGCTGGGCCACGG  174

Query  178  TGGAAGACTTTCATCCGGC-GATTCAACCGCGATCCACGCCGAGGCCAAGACTGGGACGA  236
            ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct  175  TGGAAGACTTTCATCCG-CAGATTCAACCGCGATCCACGCCGAGGTCAAGACTGGGACGA  233

Query  237  TAGCGACAAATTCCGATACGATCCTGTGACTTACACTTTGAGTTTCGAAGATGAAGACAA  296
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  234  TAGTGACAAATTCCGATACGATCCTGTGAGTTACACTTTGAGTTTCGAAGATGAAGACAA  293

Query  297  AGACGACGACGACGAAGCTGGATTAGGTGGAGCCAGAAGCTTCTCGATGCGCTACGCTTC  356
            |||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct  294  AGACGACGACGACGAAGCTGGAGTCGGTGGAGTCAGAAGCTTCTCGATGCGCTACGCTTC  353

Query  357  TGTCCCCGTTGCTTCAGGTACAA-CTCCTGCCGTCAAAAGCGTTGACGCCGTGAAATGAT  415
            |||||||||||||||||||| || |||| || || |  ||||||||||||||||||||||
Sbjct  354  TGTCCCCGTTGCTTCAGGTA-AATCTCCCGCTGTTATCAGCGTTGACGCCGTGAAATGAT  412


 Score =  143 bits (77),  Expect = 2e-33
 Identities = 96/104 (92%), Gaps = 5/104 (5%)
 Strand=Plus/Plus

Query  415  TGTTTGAAAAGTCTCTAAGTTTGGTTTGATTTATTATTTATCGTTGAAAGTTACTCCTCT  474
            ||||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  489  TGTTT-AAAAG--T-TAAGTTTGGTTTGATTTATTATTTATCGTTGAAAGTTACTCCTCT  544

Query  475  TTCAACGTGTCATGTAAAATATATCACAACGGTCTAATATTTTG  518
            ||||||||||| |||||| | |||||| ||||||||||||||||
Sbjct  545  TTCAACGTGTCTTGTAAA-TGTATCACGACGGTCTAATATTTTG  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24765434471


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5