BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485165
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48040.1 | Symbols: ARAC8, ATROP10, ROP10, ATRAC8 | RHO-rela... 1166 0.0
AT5G62880.1 | Symbols: ARAC10, ATRAC10, ATROP11, RAC10 | RAC-li... 708 0.0
AT3G48058.1 | Symbols: | pseudogene of Rac-like GTP-binding pr... 261 8e-69
> AT3G48040.1 | Symbols: ARAC8, ATROP10, ROP10, ATRAC8 | RHO-related
protein from plants 10 | chr3:17731480-17733492 FORWARD
LENGTH=959
Length=959
Score = 1166 bits (631), Expect = 0.0
Identities = 706/740 (95%), Gaps = 13/740 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTGGTTTTTGTGCGTTTCTTCGTTGAAAG-TGATTTGCTTTTTCTGAGTTAGAAT 59
||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||
Sbjct 25 TCTCTCTGGTTTTTGGGCGTTTCTTCGTTGAAAGTTG-TTTGCTTTTGGTGAGTTAGAAT 83
Query 60 GGCTACGAATGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGGAAA 119
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GGCTTCGAGTGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGGAAA 143
Query 120 AACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAACAGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAACAGT 203
Query 180 TTTTGACAACTTTAGTGCTAATGTTGTCGTTGAAGGCATCACTGTGAACTTAGGGCTTTG 239
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 204 TTTTGACAACTTTAGTGTTAATGTTGTGGTTGAAGGCATCACTGTGAACTTAGGCCTTTG 263
Query 240 GGACACTGCCGGGCAAGAAGACTATAACAGACTAAGACCTTTAAGTTACAGAGGAGCAGA 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 264 GGACACTGCCGGGCAAGAAGACTATAACAGACTAAGGCCTTTAAGTTACAGAGGAGCAGA 323
Query 300 TGTTTTTGTGTTGGCTTTCTCATTGATCAGCCGAGCTAGCTACGAGAATGTGTTTAAAAA 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 324 TGTTTTTGTGTTGGCTTTCTCATTGATCAGCCGAGCTAGCTATGAGAATGTGTTTAAAAA 383
Query 360 GTGGATCCCTGAACTCCAACACTTTGCACCAGGAGTCCCCATTGTGCTTGTTGGTACCAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 GTGGATCCCTGAACTCCAACACTTTGCACCAGGAGTCCCCATTGTGCTTGTTGGTACCAA 443
Query 420 AATGGATCTTCGTGAAGATAAACATTATTTGTCTGATCATCCTGGACTGTCTCCCG-TAA 478
|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||
Sbjct 444 AATGGATCTTCGTGAAGATAGACATTACTTGTCTGATCATCCTGGACTGTC-CCCGGTAA 502
Query 479 CTACATCACAGGGAGAGGAACTCCGCAAGCATATCGGAGCGGCGTATTACATTGAATGTA 538
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 503 CTACATCACAGGGAGAGGAACTCCGCAAGCATATCGGAGCGACTTATTACATTGAATGTA 562
Query 539 GCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATCAAAGTAGTAATTA 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 563 GCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATTAAAGTAGTAATTA 622
Query 599 AACCAGCGGTGAAACAAAAGGagaagaagaagaagaagcagaagCCGCGCAATGGATGTC 658
||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 623 AACCAGCAGTGAAACAAAAGGAGAAGAAGAAGAAG---CAGAAGCCTCGCAGCGGATGTC 679
Query 659 TCTCAAACATTCTGTGTGGGAAGCATTGATGATGACTCAACTCCATCTGATGATTGTTCA 718
||||||||||||||||||||||| |||||||| | |||| |||||||||||||||||||
Sbjct 680 TCTCAAACATTCTGTGTGGGAAGAATTGATGA-G--TCAATTCCATCTGATGATTGTTCA 736
Query 719 CTTCCTTTCtttttt-tttt 737
|||| ||| |||||| ||||
Sbjct 737 CTTC-TTT-TTTTTTCTTTT 754
Score = 130 bits (70), Expect = 2e-29
Identities = 84/91 (92%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 759 AATGAGTAGCTTCTTTGATTTTGTTTGTACATGTAAACCTGATGTTTGTTTGTTTCGATT 818
||| ||||||||||| |||| |||||||| |||| | |||||||||||||||||||||||
Sbjct 824 AATTAGTAGCTTCTTCGATTCTGTTTGTATATGTGACCCTGATGTTTGTTTGTTTCGATT 883
Query 819 TGGTTTGACCCTTATAGAATTGTTTTAGCCA 849
|||||||||||||||||||||||| ||||||
Sbjct 884 TGGTTTGACCCTTATAGAATTGTTATAGCCA 914
> AT5G62880.1 | Symbols: ARAC10, ATRAC10, ATROP11, RAC10 | RAC-like
10 | chr5:25237134-25239174 FORWARD LENGTH=985
Length=985
Score = 708 bits (383), Expect = 0.0
Identities = 527/595 (89%), Gaps = 16/595 (3%)
Strand=Plus/Plus
Query 57 AATGGCTACGAA-TGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTG 115
||||||| | || ||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 102 AATGGCTTC-AAGTGCTTCAAAGTTCATCAAGTGTGTGACTGTTGGTGATGGTGCTGTTG 160
Query 116 GAAAAACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAA 175
| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 161 GTAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGACTACATACCAA 220
Query 176 CAGTTTTTGACAACTTTAGTGCTAATGTTGTCGTTGAAGGCATCACTGTGAACTTAGGGC 235
|||||||||||||||||||||| |||||||| |||||||||| |||||| || || ||||
Sbjct 221 CAGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGTCAATTTGGGGC 280
Query 236 TTTGGGACACTGCCGGGCAAGAAGACTATAACAGACTAAGACCTTTAAGTTACAGAGGAG 295
||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 281 TTTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAGTTACAGGGGAG 340
Query 296 CAGATGTTTTTGTGTTGGCTTTCTCATT-GATCAGCCGAGCTAGCTACGAGAATGTGTTT 354
|||||||||| || ||| |||||||||| | ||||||||||||||||||||||||| |||
Sbjct 341 CAGATGTTTTCGTCTTGTCTTTCTCATTAG-TCAGCCGAGCTAGCTACGAGAATGTTTTT 399
Query 355 AAAAAGTGGATCCCTGAACTCCAACACTTTGCACCAGGAGT-CCCCATTGTGCTTGTTGG 413
|||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||
Sbjct 400 AAAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCC-TTGTCCTTGTTGG 458
Query 414 TACCAAAATGGATCTTCGTGAAGATAAACATTATTTGTCTGATCATCCTGGACTGTCTCC 473
||||||| | ||||||||||||||||| ||||||||| |||||||||||||||| || ||
Sbjct 459 TACCAAATTAGATCTTCGTGAAGATAAGCATTATTTGGCTGATCATCCTGGACTATC-CC 517
Query 474 C-GTAACTACAT-CACAGGGAGAGGAACTCCGCAAGCATA-TCGGAGCGGCGTATTACAT 530
| |||||||| | ||||||||||||| | || |||| || | || ||| ||||||||||
Sbjct 518 CTGTAACTAC-TGCACAGGGAGAGGAGTTGCGTAAGC-TAATTGGTGCGACGTATTACAT 575
Query 531 TGAATGTAGCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATCAAAGT 590
||| ||||| |||||||||||||||||||||||||| || |||||| |||| || ||||
Sbjct 576 TGAGTGTAGTTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCTGCGAT-AAAGG 634
Query 591 A-GTAATTAAACCAGC-GGTGAAACAAAAGGagaagaagaagaagaagcagaagC 643
| || || ||||| | ||| |||||||||||||||| ||||||||| ||||||
Sbjct 635 AAGTGATCAAACCT-CTGGTTAAACAAAAGGAGAAGACTAAGAAGAAGAAGAAGC 688
> AT3G48058.1 | Symbols: | pseudogene of Rac-like GTP-binding
protein | chr3:17742335-17742715 FORWARD LENGTH=272
Length=272
Score = 261 bits (141), Expect = 8e-69
Identities = 163/173 (94%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 490 GGAGAGGAACTCCGCAAGCATATCGGAGCGGCGTATTACATTGAATGTAGCTCAAAAACT 549
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 99 GGAGAGGAACTCCGCAAGCATATCGGAGCGACTTATTACATTGAATGTAGCTCAAAAACT 158
Query 550 CAACAGAATGTGAAAGCCGTATTTGATGCTGCTATCAAAGTAGTAATTAAACCAGCGGTG 609
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 159 CAACAGAATGTGAAAGCCATATTTGATGCTGCTATCAAAGTAGTAATTAAACCAGCAGTG 218
Query 610 AAACAAAAGGagaagaagaagaagaagcagaagCCGCGCAATGGATGTCTCTC 662
|||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 219 AAACAAAAGGAGAAGAAGAAGAAG---CATAAGCCTCGCAACGGATGTCTCTC 268
Score = 100 bits (54), Expect = 2e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTGGTTTTTGTGCGTTTCTTCGTTGAAAGTGATTTGCTTTT-TCTGAGTTAGAAT 59
||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 13 TCTCTCTGGTTTTTGTGCGTTTCTTCGTTGAAAGTTATTTGCTTTTGT-TGAGTTAGAAT 71
Query 60 GGCT 63
||||
Sbjct 72 GGCT 75
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5