BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485174
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48140.1 | Symbols: | B12D protein | chr3:17778356-17779549... 876 0.0
> AT3G48140.1 | Symbols: | B12D protein | chr3:17778356-17779549
FORWARD LENGTH=632
Length=632
Score = 876 bits (474), Expect = 0.0
Identities = 578/623 (93%), Gaps = 28/623 (4%)
Strand=Plus/Plus
Query 1 AATATAAAGTGAGGTCTTTTCTACGTCTCTTCAACATTCTCAGAGAAAGCCG-------- 52
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 13 AATATAAAGTGAGGTCTTTTCTACGTCTCTTCAACATTCTCAGAG-AAGCCGTCTTCTTC 71
Query 53 -T-CTTCAATCTCTCTCTTTCGTATCATCTTCTCCGCGATTTCAATGGCGAGCCGTTGGT 110
| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 72 CTCCTTCAATCTCTCTCGTTCGTATCATCTGCTCTGCGATTTCAATGGCGAGCCGTTGGT 131
Query 111 TGAGACCTGAGGTGTATCCTTTGTTCGCTGCTACCGGAGTTGCCGTTGGGATCTGTGCTT 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 132 TGAGACCTGAGGTGTATCCTTTGTTCGCTGCTACCGGAGTTGCCGTTGGGATCTGTGCGT 191
Query 171 TTTCGTTGATCAGAAACATCACCGGAAACCCTGAAGTCAGATGCAATAAGGAGAACAGGG 230
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 192 TTTCCTTGATCAGAAACATCACCGGAAACCCTGAAGTCAGATGCACCAAGGAGAACAGGG 251
Query 231 CTGCTGGAATTTTGGATAACCATGCAGAGGGAGAGAAGTATAAGGAAAATTTCCTGAGGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTGCTGGAATTTTGGATAACCATGCAGAGGGAGAGAAGTATAAGGAAAATTTCCTGAGGA 311
Query 291 AGTTTGTTCGCAATAAGAAACCTGAAATCATGCCAGGACTCAACAAGTTCTTCACTGATC 350
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 312 AGTTTGTTCGCAACAAGAAACCTGAAATCATGCCTGGACTCAACAAGTTCTTCACTGATC 371
Query 351 CTACATACTGAAACCATCTTTGCAGACCGCTTTGTCATATTGTTTCTGGAATTGAATCTC 410
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 372 CTACATACTGAAACCATCTTTGCACACCGCTTTGTCGTATTGTTTCTGGAATTGAATCTC 431
Query 411 TT-GTGATATAAA-CCTCATTTGCCAATTTCACGTTGTTGATGTATCCTCCAGCTGAAGA 468
|| |||||||||| || |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 432 TTTGTGATATAAAACCGCATTTGTCAATTTCACATTGTTGATGTATCCTCCAGCTGAAGA 491
Query 469 C--TTGTTAATGCTGGGCTTATGTTGTCACTTTTAAGCAGAAAATAACTATTTGTATGAA 526
| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 492 CACTTGTTAATGCTGGGCTTATGTTGTCACTTTTAAGCAGAAAAT---T----GTATGAC 544
Query 527 TTGCCTT-TGGCAGCATACT-TTT-AATGGCAATCTCATCTGAGAGTAATAAGCACTT-A 582
|||| || |||||||||||| ||| |||| | |||||||||||||||||||||||||| |
Sbjct 545 TTGC-TTATGGCAGCATACTCTTTTAATGACCATCTCATCTGAGAGTAATAAGCACTTGA 603
Query 583 CTATCTTCAAATTGTCATGATTT 605
||||||||||||||||||||||
Sbjct 604 -TATCTTCAAATTGTCATGATTT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5