BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485175
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 3240 0.0
> AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex
subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967
Length=1967
Score = 3240 bits (1754), Expect = 0.0
Identities = 1872/1930 (97%), Gaps = 4/1930 (0%)
Strand=Plus/Plus
Query 1 TCTCTCCACGACGAAGAAGAGATTCTTCGATTCTTTTTTGAATACTTTTAAGTT-AACTC 59
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 4 TCTCTCCACGACGAAGAAGAGATTCTTCGATTCTTTTTTGAATAC-TTAAAGTTAAACTC 62
Query 60 TCAGTTTCTGCTTCTGCTATGGTCTCTAAAGA-TAGTTGTCGCAACGAAATCCGTGCGGC 118
|||||||||||||||||||||||||||||||| | |||| || |||||||| ||||||||
Sbjct 63 TCAGTTTCTGCTTCTGCTATGGTCTCTAAAGAGT-GTTGCCGAAACGAAATACGTGCGGC 121
Query 119 TATTCGACAGCTTAGCGACCGTTGTTTATACTCCGCCGCAAAGTGGGCAGGAGAACAGCT 178
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 122 TATTCGACAGCTTAGCGACCGCTGTTTATACTCCGCCGCAAAGTGGGCAGGAGAGCAGCT 181
Query 179 TGTGGGGATAGAGCAAGACCCGTCTAATTTTACACCTGCGAATACGAGGTTTCAGCGAGG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TGTGGGGATAGAGCAAGACCCGTCTAATTTTACACCTGCGAATACGAGGTTTCAGCGAGG 241
Query 239 AAGCTCTAGCATCCGGAGAAGGTTCAGCACCAATGAATCTATTTCAACACCATTACCTTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 AAGCTCTAGCATCCGGAGAAGGTTCAGCACCAATGAATCTATTTCAACACCGTTACCTTC 301
Query 299 CGTTGGGTTCTCTCAAGCAGCTACTCCTCTCCCGGAAGAAGATGAAGCGATTGATGGTGA 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGTTGGCTTCTCTCAAGCAGCTACTCCTCTCCCGGAAGAAGATGAAGCGATTGATGGTGA 361
Query 359 CTTTTACCTTTTAGCAAAGTCCTACTTTGATTGTCGAGAGTACAGACGGGCCTCCCATGT 418
| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 362 CATTTACCTTTTAGCAAAGTCCTATTTTGATTGTCGAGAGTATAGACGGGCCTCCCATAT 421
Query 419 GCTTCGTGATCAAGTGAGCAAGAAATCAGTGTTCTTGCGTTACTATGCCCTTTATCTGGC 478
||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 422 GCTTCGTGACCAAGTGAGCAAGAAATCACTGTTCTTGCGTTACTATGCGCTTTATCTGGC 481
Query 479 TGGGGAAAAACGGAAAGAAGAAGAAATGATAGAACTTGAAGGCCCTTTGGGTAAGAGTGA 538
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGGAGAAAAACGGAAAGAGGAAGAAATGATAGAACTTGAAGGCCCTTTGGGTAAGAGTGA 541
Query 539 TGCCATAAACCGCGAACTGGTATCTTTGGAGAGGGACTTATCAGCTCTGAGGAGGACAGG 598
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 TGCCATAAACCGTGAACTGGTATCTTTGGAGAGGGATTTATCAGCTCTGAGGAGGACAGG 601
Query 599 AGCAATTGACTCTTTTGGATTATACTTGTATGGTGTGATTCTTAAAGAAAAGGGAAATGA 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 AGCAATTGACTCTTTTGGATTATACTTGTATGGTGTGGTTCTTAAAGAAAAGGGAAATGA 661
Query 659 AAGTCTTGCTCGGGCCAGCCTCGTGGAGTCTGTGAACAGCTATCCATGGAATTGGAGTGC 718
||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 662 AAGTCTTGCACGTGCCAGCCTTGTGGAGTCTGTCAACAGTTATCCTTGGAACTGGAGTGC 721
Query 719 CTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAGTCTTGAATAGCCTTAATTTAAA 778
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 722 CTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAACTTAAA 781
Query 779 CAATCACTGGATGAAAGAGTTTTTTCTTGGCAATGCTTATCAAGAACTCAGAATGCACAC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CAATCACTGGATGAAAGAGTTTTTTCTTGGCAATGCTTATCAAGAACTCAGAATGCACAC 841
Query 839 CGAGTCTTTGGCGAAGTACGAGTATCTGCAAGGTATTTTCAGTTTTAGCAATTACATCCA 898
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 842 CGAGTCTTTGGCGAAGTACGAGTATTTGCAAGGTATTTTCAGTTTTAGCAATTACATCCA 901
Query 899 AGCTCAAACTGCAAAAGCTCAGTATAGTCTTAGGGAATTTGACCAGGTTGAAATCATGTT 958
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 902 AGCTCAAACTGCAAAAGCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTT 961
Query 959 TGAAGAACTTCTGAGAAACGATCCCTATCGGGTGGAAGATATGGATTTGTATTCTAATGT 1018
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 962 TGAAGAACTTCTGAGAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGT 1021
Query 1019 TCTGTATGCAAAAGAAGCATGTGCTGCGCTGAGTTATCTTGCACATAAGGTGTTTTTGAC 1078
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1022 TCTGTATGCAAAAGAAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGAC 1081
Query 1079 TGATAAGTACAGACCTGAGTCTTGCTGCATCATTGGCAACTACTATAGTTTAAAAGGCCA 1138
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1082 TGATAAGTACAGACCTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCA 1141
Query 1139 GCATGAGAAAGCAGTTATGTACTTCCGTAGAGCTTTGAAACTGAACAAGAAGTATTTATC 1198
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1142 GCATGAGAAAGCAGTTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATC 1201
Query 1199 TGCGTGGACTCTTATGGGACATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGA 1258
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TGCGTGGACTCTTATGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGA 1261
Query 1259 TGCATATCGACGAGCTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGG 1318
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1262 TGCATATCGACGAGCTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGG 1321
Query 1319 ACAAGCATATGAGATGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCAT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 ACAAGCATATGAGATGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCAT 1381
Query 1379 ATTCTTTCTTCCAAACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGA 1438
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ATTCTTTCTTCCAAATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGA 1441
Query 1439 ACAGCTTTACATGCTTGAAGAGGCCATCAAGTGTTACAAAAGAGCTGTGAACTGTACTGA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ACAGCTTTACATGCTTGAAGAGGCCATCAAGTGTTACAAAAGAGCTGTGAACTGTACTGA 1501
Query 1499 CACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTGGACGTAATGA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTGGACGTAATGA 1561
Query 1559 AGAAGCTGCATTTTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAGGATTAGAAGG 1618
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 AGAAGCTGCATATTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAGGATTAGAAGG 1621
Query 1619 ACCAAACATGTTTGAGGCTTTAGTTTTTCTTGCTACACATTTTAAAACTCACAAGAAGTT 1678
||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||
Sbjct 1622 ACCGAACATGTTTGAGGCTTTGGTTTTTCTTGCCACACATTTTAAAAATCACAAGAAATT 1681
Query 1679 CGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGACCTGAAAAAGAAAA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 CGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGACCTGAAAAAGAAAA 1741
Query 1739 GGCAAAGAGCTTACTCAGAGGGATCAGAATGGCGCAAACCGGTTTTCCTTCAATGGATCT 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 GGCAAAGAGCTTACTCAGAGGGATCAGAATGGCGCAAACCGGTTTTCCTTCAATGGATCT 1801
Query 1799 CGAGCATTTTCCTATTTAGCTGTACTGTTCCGAACACTCAAAAGCTCTTTGAGAGAGAAT 1858
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1802 CGAGCATTTTCCTATTTAGCTGTACTGTTCCGAATACTCAAAAGCTCTTTGAGAGAGAAT 1861
Query 1859 ATCTCCCATCATGTACACTATAAACCTTTGTACCAAATTATATATTTCATCAAGATGATT 1918
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1862 GTCTCACATCATGTACACTATAAACCTTTGTACCAAGTTATATATTTCATCAAGATGATG 1921
Query 1919 CTTCTGTGAT 1928
|| |||||||
Sbjct 1922 CTCCTGTGAT 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95481436590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5