BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485177
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:... 2169 0.0
> AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:17783331-17786099
FORWARD LENGTH=1775
Length=1775
Score = 2169 bits (1174), Expect = 0.0
Identities = 1422/1539 (92%), Gaps = 27/1539 (2%)
Strand=Plus/Plus
Query 1 AATTTTGGaaaataaaaatgaaaaaaGTTGAACAGAATCCACAAAATATGGTAACAAATT 60
|||||||||||| ||||||| ||||||||||||||||||| ||||||| |||| |||||
Sbjct 11 AATTTTGGAAAAGAAAAATG-AAAAAGTTGAACAGAATCCTGAAAATATTGTAAGAAATT 69
Query 61 TTCTTAACCGAATaaac-aaaagaaaaaaaccaaaaaaTTCCGATCTGAACCGAGCACAA 119
|||| ||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct 70 TTCTAAACCGAAAAAACAAAAAGACAAAAACCAAAAAATTGCGATCTGAACCGAGCACAA 129
Query 120 AACCGTAAAAGTTTCAGCTTTACCAAAATTTGGAGGAGTGT-T-ATTGTTACGAAGAAGG 177
||||||||| ||||||||||||||||||||| ||||||||| | | ||||||| ||||||
Sbjct 130 AACCGTAAAGGTTTCAGCTTTACCAAAATTTAGAGGAGTGTGTAAATGTTACGGAGAAGG 189
Query 178 AGGAGCCAAAAAATTCAAATTGGCGCTCAAGTATCTTCCCAAATTCCCCCTCTCTCATTT 237
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 190 AGGAGCCAAAAAATTCAAATTGGCGCTCAAGTATCTTGGGAAATTCCCCCTCTCTCTTTT 249
Query 238 T-GGAAATCCCTCCAAAATACAATATCAAATTCTCAATCCCAGAAGACATCGTTTGCGTC 296
| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 250 TAGGAAATCCCTCCAAAATACAATATCAAATTCTCAAT--C-GCAGACATCGTTTGCGTC 306
Query 297 AATCATGTCAGATCTATCTCCAGAAAGACTCAAACTT-CC----C--AT--TACTTCCAT 347
|| ||||||||||||||| ||||||||| |||||||| || | | | |||||||
Sbjct 307 AACCATGTCAGATCTATCGCCAGAAAGATTCAAACTTGCCGTTACTTCTCCTTCTTCCAT 366
Query 348 GCCGGAATCTTCTT---C-TT-C-TTTACACCATTCCTATAGTCGGAAACAGAAATCTCT 401
||||||||||||| | || | |||||||||||||||||||| ||||||||||||||
Sbjct 367 ACCGGAATCTTCTTCGGCTTTACAATTACACCATTCCTATAGTCGCAAACAGAAATCTCT 426
Query 402 CGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGATGGGATTGAAATGATTGG 461
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 427 CGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGAAGGGATTGAAATGGTTGG 486
Query 462 GCTTGATGATGCTGCTTCGAAATTAGGAGTGGAGAGACGAAGAATCTATGATATTGTTAA 521
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GCTTGATGATGCTGCCTCGAAATTAGGAGTGGAGAGACGAAGAATCTATGATATTGTTAA 546
Query 522 TGTGCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGG 581
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGTTCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGG 606
Query 582 GTTTGCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAAGGGGTTAAGGACACTTT 641
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 607 GTTTTCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAGGGGGTTAAGGACACTTT 666
Query 642 TCATCGTTTCTATGTGAATGAGAATGTTAAAGGATCTGATGATGAGGATGATTATGAAGA 701
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 667 TCATCGTTTCTATGTCAATGAGAATGTTAAAGGATCTGATGATGAGGATGATGATGAAGA 726
Query 702 GTCTTCTCAGCCCCATTCTAGTAGCCAAACTGATAGTTCAAAACCTGGCTCTCTTCCCCA 761
|||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 727 GTCTTCTCAGCCTCACTCTAGTAGCCAGACTGATAGTTCAAAACCTGGTTCTCTTCCCCA 786
Query 762 ATCTTCAGATCCCTCAAAAATAGATAATCGACGAGAGAAATCTTTAGGATTGCTTACTCA 821
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 787 ATCTTCAGATCCCTCCAAAATAGATAACCGACGAGAGAAATCTTTAGGATTGCTTACTCA 846
Query 822 GAACTTTATCAAACTCTTTATTTGCTCCGAATTTATTAGAATCATTTCCCTTGACGAGGC 881
||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| || ||
Sbjct 847 GAACTTTATCAAACTCTTTATTTGCTCTGAAGCTATTAGGATCATCTCCCTTGATGACGC 906
Query 882 TGCAAAATTACTGCTCGGTGATGCCCACAATACATCGATAATGAGAACAAAAGTGAGGCG 941
||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 907 TGCAAAATTACTGCTTGGTGATGCCCACAATACATCAATAATGCGAACTAAAGTGAGGCG 966
Query 942 GCTTTATGATATTGCAAATGTCCTGTCATCTATGAATCTTATCGAGAAGACTCACACCTT 1001
|||||||||||| ||||||||| |||| || |||||||| || |||||||||||||||||
Sbjct 967 GCTTTATGATATAGCAAATGTCTTGTCGTCAATGAATCTCATAGAGAAGACTCACACCTT 1026
Query 1002 AGATTCTCGAAAACCAGCTTTCAAGTGGTTAGGATACAATGGTGAGCCTACTTTCACGTT 1061
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1027 AGATTCTAGGAAACCAGCTTTCAAGTGGTTAGGGTACAATGGTGAGCCTACTTTCACACT 1086
Query 1062 GAGCAGCGATTTGATGCTACTGGAATCAAGAAAAAGAGCTTTCGGAACTGATCTTACTAA 1121
||||||||||||| ||| | |||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1087 GAGCAGCGATTTGTTGCAATTGGAGTCAAGAAAAAGAGCTTTCGGAACTGATATTACAAA 1146
Query 1122 TGTTAATGTCAAGAGAAGCAAATCGTCATCTTCCTCCCAAGAAATTGCTACAGAGAGAAA 1181
|| ||||| |||||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 1147 CGTCAATGTTAAGAGAAGCAAATCATCATCTTCGTCCCAAGAAAACGCTACAGAGAGAAG 1206
Query 1182 GCTAAAGATGAAAAAACACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCA 1241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GCTAAAGATGAAAAAGCACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCA 1266
Query 1242 TGAACCAAGACATGGATC-A-A-GAGGTTATCATTTTGGTCCTTTTGCACCAGGCACTGG 1298
|||| ||||||||||||| | | ||||||| |||||||| ||||||||||||||||||||
Sbjct 1267 TGAATCAAGACATGGATCAAGAGGAGGTTACCATTTTGGACCTTTTGCACCAGGCACTGG 1326
Query 1299 TACATATCCAAGAGCTGGTTTGGAGGACAACTCTAGGAGAGCTTTTGATGTTGAGAATCT 1358
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1327 TACATATCCAACTGCTGGTTTAGAGGATAACTCTAGGAGAGCTTTTGATGTTGAGAATCT 1386
Query 1359 GAATTCGGATTACCGTCCCTCTTACCAAAACCAAGTTTTGAAAGACCTCTTTTCCCATTA 1418
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GGATTCTGATTACCGTCCCTCTTACCAAAACCAAGTTTTGAAAGACCTCTTTTCCCATTA 1446
Query 1419 CATGGATGCTTGGAAGACATGGTACAGCGAAGTCACCCAGAAGAATCCATTACCAAATAC 1478
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1447 CATGGATGCTTGGAAGACATGGTTCAGCGAAGTCACCCAGGAGAATCCATTACCTAATAC 1506
Query 1479 ATCACAACACCGTTAGAtcttcttcttcttcttct-ctt 1516
|||||||||||||||||||||||| |||||||||| |||
Sbjct 1507 ATCACAACACCGTTAGATCTTCTTTTTCTTCTTCTTCTT 1545
Score = 339 bits (183), Expect = 7e-92
Identities = 209/220 (95%), Gaps = 7/220 (3%)
Strand=Plus/Plus
Query 1496 tcttcttcttcttcttctcttACCTGTG-A-A-C-ATCATCATTCGTATAGAGAGCTTCA 1551
|||||||||||||||||||||||||||| | | | |||||||||||| ||||||||||||
Sbjct 1557 TCTTCTTCTTCTTCTTCTCTTACCTGTGAACATCAATCATCATTCGTGTAGAGAGCTTCA 1616
Query 1552 AGAGTCATTTCTTTTGATCAATGTGGTTTAGTTTCTCCACACAATTGTAACTGCAAGAAT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AGAGTCATTTCTTTTGATCAATGTGGTTTAGTTTCTCCACACAATTGTAACTGCAAGAAT 1676
Query 1612 CCGACATTAATTCACAGATCGCATACCCTCTTTGCTTTCTGAAGTTC-CTGTAGGCTATA 1670
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1677 CCGACATTAATTCACAGATCGCATACCCTCTTTGCTTTCTGAAGTTTACTGTAGGCTGTA 1736
Query 1671 ACTTTTGTGA-GTTACATATAAGAGCATTCATCTTTTGCC 1709
|||||||| | ||||||||||||||||||||||||| |||
Sbjct 1737 ACTTTTGT-ATGTTACATATAAGAGCATTCATCTTTCGCC 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5