BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485183
Length=208
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48209.1 | Symbols: | Plant thionin family protein | chr3:1... 296 5e-80
> AT3G48209.1 | Symbols: | Plant thionin family protein | chr3:17847681-17847884
FORWARD LENGTH=204
Length=204
Score = 296 bits (160), Expect = 5e-80
Identities = 193/208 (93%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 1 ATGGAGATGAAGAAATGTAGTatgatgatgatgatgatgatattgatgatgCTGGTGATG 60
|||||||||||||||||||| | ||||| |||||||| | | |||||||| ||||||||
Sbjct 1 ATGGAGATGAAGAAATGTAG--T-ATGATCATGATGAT-A-A-TGATGATGGTGGTGATG 54
Query 61 GCATCCATAAGAGGAGGAGATGCAGTTATAATAAGAACAACATGCAAGCAAATGTGCATC 120
||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 55 GCATCCATACGAGGAGGAGAAGCAATTATAATAAGAACAACATGCAAGCAAATGTGCATC 114
Query 121 GACCAATGTGGTGGCCGCATCACTATCCCTGAAACCCCTTGTCTCCGTAAATGTCTCCAC 180
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 115 GACCAATGTGGTGGCCGCATCACTGTCCCTGAGACCCCTTGTCTCCGTAAATGTCTTCAC 174
Query 181 GAGAAATGTGGCTTTCCAGCTCCTCCGT 208
|| |||||||||||||||||||||||||
Sbjct 175 GAAAAATGTGGCTTTCCAGCTCCTCCGT 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9305749935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5